2ES7 | pdb_00002es7

Crystal structure of Q8ZP25 from Salmonella typhimurium LT2. NESG TARGET STR70

PDB DOI: https://doi.org/10.2210/pdb2ES7/pdb

Classification: ISOMERASE
Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2005-10-25 Released: 2005-11-01
Deposition Author(s): Benach, J., Su, M., Forouhar, F., Chen, Y., Ho, C.K., Janjua, H., Cunningham, K., Ma, L.-C., Rong, X., Liu, J., Baran, M., Acton, T.B., Rost, B., Montelione, G.T., Tong, L., Hunt, J.F., Northeast Structural Genomics Consortium (NESG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free:
0.338 (Depositor), 0.347 (DCC)
R-Value Work:
0.285 (Depositor), 0.295 (DCC)
R-Value Observed:
0.285 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Crystal structure of Q8ZP25 from Salmonella typhimurium LT2 NESG target STR70.

Benach, J., Su, M., Forouhar, F., Chen, Y., Janjua, H., Rong, B.X., Acton, T.B., Montelione, G.T., Hunt, J.F., Tong, L.

To be published.

Macromolecule Content

Total Structure Weight: 65.15 kDa
Atom Count: 3,840
Modeled Residue Count: 412
Deposited Residue Count: 568
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
putative thiol-disulfide isomerase and thioredoxin	A, B, C, D	142	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2	Mutation(s): 3 Gene Names: STM1790
UniProt
Find proteins for Q8ZP25 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore Q8ZP25 Go to UniProtKB: Q8ZP25
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q8ZP25
Sequence Annotations Expand
Reference Sequence

Small Molecules

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B, C, D	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.80 Å
R-Value Free: 0.338 (Depositor), 0.347 (DCC)
R-Value Work: 0.285 (Depositor), 0.295 (DCC)
R-Value Observed: 0.285 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.549	α = 90
b = 71.156	β = 90.11
c = 95.004	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
SOLVE	phasing
RESOLVE	model building
CNS	refinement
RESOLVE	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2005-11-01

Deposition Author(s):

Northeast Structural Genomics Consortium (NESG)

Revision History (Full details and data files)

Version 1.0: 2005-11-01
Type: Initial release
Version 1.1: 2008-05-01
Changes: Version format compliance
Version 1.2: 2011-07-13
Changes: Source and taxonomy, Version format compliance
Version 1.3: 2024-11-13
Changes: Data collection, Database references, Derived calculations, Structure summary