2H01

PY00414- Plasmodium yoelii thioredoxin peroxidase I

• PDB DOI: https://doi.org/10.2210/pdb2H01/pdb
• Entry: 2H01 supersedes: 2FEG

• Classification: OXIDOREDUCTASE
• Organism(s): Plasmodium yoelii
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2006-05-12 Released: 2006-05-30 
• Deposition Author(s): Artz, J., Qiu, W., Min, J.R., Dong, A., Lew, J., Melone, M., Alam, Z., Weigelt, J., Sundstrom, M., Edwards, A.M., Arrowsmith, C.H., Bochkarev, A., Hui, R., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 0.288 
• R-Value Work: 0.258 
• R-Value Observed: 0.258 

Starting Model: experimental

Re-refinement Note

A newer entry is available that reflects an alternative modeling of the original data: 4L0W

Literature

Crystal structure of PY00414 - a Plasmodium yoelii thioredoxin peroxidase I

Artz, J., Qiu, W., Min, J.R., Dong, A., Lew, J., Melone, M., Alam, Z., Weigelt, J., Sundstrom, M., Edwards, A.M., Arrowsmith, C.H., Bochkarev, A., Hui, R.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 21.37 kDa 
• Atom Count: 1,422 
• Modelled Residue Count: 174 
• Deposited Residue Count: 192 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
2-CYS PEROXIREDOXIN	A	192	Plasmodium yoelii	Mutation(s): 0  EC: 1.11.1 (PDB Primary Data), 1.11.1.24 (UniProt)
UniProt
Find proteins for Q7RSE5 (Plasmodium yoelii yoelii) Explore Q7RSE5  Go to UniProtKB:  Q7RSE5

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 0.288 
• R-Value Work: 0.258 
• R-Value Observed: 0.258 
• Space Group: P 4 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 105.076	α = 90
b = 105.076	β = 90
c = 41.833	γ = 90

Software Package:

Software Name	Purpose
CrystalClear	data collection
HKL-2000	data reduction
MOLREP	phasing
CNS	refinement
CrystalClear	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2006-05-30 
Deposition Author(s): Artz, J., Qiu, W., Min, J.R., Dong, A., Lew, J., Melone, M., Alam, Z., Weigelt, J., Sundstrom, M., Edwards, A.M., Arrowsmith, C.H., Bochkarev, A., Hui, R., Structural Genomics Consortium (SGC)
• This entry supersedes: 2FEG

Revision History  

• Version 1.0: 2006-05-30
  Type: Initial release
  
• Version 1.1: 2007-12-03
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2018-03-07
  Changes: Data collection
• Version 1.4: 2023-08-30
  Changes: Data collection, Database references, Refinement description