2J4M | pdb_00002j4m

Double dockerin from Piromyces equi Cel45A


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 80 
  • Conformers Submitted: 
  • Selection Criteria: RANDOM FROM BEST 25 

wwPDB Validation 3D Report Full Report

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This is version 1.3 of the entry. See complete history

Literature

Characterization of a Double Dockerin from the Cellulosome of the Anaerobic Fungus Piromyces Equi.

Nagy, T.Tunnicliffe, R.B.Higgins, L.D.Walters, C.Gilbert, H.J.Williamson, M.P.

(2007) J Mol Biology 373: 612

  • DOI: https://doi.org/10.1016/j.jmb.2007.08.007
  • Primary Citation Related Structures: 
    2J4M, 2J4N

  • PubMed Abstract: 

    The assembly into supramolecular complexes of proteins having complementary activities is central to cellular function. One such complex of considerable biological and industrial significance is the plant cell wall-degrading apparatus of anaerobic microorganisms, termed the cellulosome. A central feature of bacterial cellulosomes is a large non-catalytic protein, the scaffoldin, which contains multiple cohesin domains. An array of digestive enzymes is incorporated into the cellulosome through the interaction of the dockerin domains, present in the catalytic subunits, with the cohesin domains that are present in the scaffoldin. By contrast, in anaerobic fungi, such as Piromyces equi, the dockerins of cellulosomal enzymes are often present in tandem copies; however, the identity of the cognate cohesin domains in these organisms is unclear, hindering further biotechnological development of the fungal cellulosome. Here, we characterise the solution structure and function of a double-dockerin construct from the P. equi endoglucanase Cel45A. We show that the two domains are connected by a flexible linker that is short enough to keep the binding sites of the two domains on adjacent surfaces, and allows the double-dockerin construct to bind more tightly to cellulosomes than a single domain and with greater coverage. The double dockerin binds to the GH3 beta-glucosidase component of the fungal cellulosome, which is thereby identified as a potential scaffoldin.


  • Organizational Affiliation
    • Institute for Cell and Molecular Biosciences, The University of Newcastle upon Tyne, The Medical School, Framlington Place, Newcastle upon Tyne NE2 4HH, UK.

Macromolecule Content 

  • Total Structure Weight: 10.91 kDa 
  • Atom Count: 759 
  • Modeled Residue Count: 100 
  • Deposited Residue Count: 100 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
ENDOGLUCANASE 45A100Piromyces sp. 'equiMutation(s): 0 
EC: 3.2.1.4
UniProt
Find proteins for Q9P868 (Piromyces equi)
Explore Q9P868 
Go to UniProtKB:  Q9P868
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9P868
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 80 
  • Conformers Submitted: 
  • Selection Criteria: RANDOM FROM BEST 25 

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2007-09-25
    Type: Initial release
  • Version 1.1: 2011-05-08
    Changes: Version format compliance
  • Version 1.2: 2011-07-13
    Changes: Version format compliance
  • Version 1.3: 2024-11-20
    Changes: Data collection, Database references, Other, Structure summary