2JJ6 | pdb_00002jj6

Crystal structure of the putative carbohydrate recognition domain of the human galectin-related protein

• PDB DOI: https://doi.org/10.2210/pdb2JJ6/pdb

• Classification: SUGAR BINDING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2008-03-18 Released: 2008-05-06 
• Deposition Author(s): Thore, S., Walti, M.A., Kunzler, M., Aebi, M.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.259 (Depositor), 0.203 (DCC) 
• R-Value Work: 
  0.217 (Depositor), 0.220 (DCC) 
• R-Value Observed: 
  0.217 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure of the Putative Carbohydrate Recognition Domain of Human Galectin-Related Protein

Walti, M.A., Thore, S., Kunzler, M., Aebi, M.

(2008) Proteins 72: 804-808

• PubMed: 18433051 
• DOI: https://doi.org/10.1002/prot.22078
• Primary Citation Related Structures: 
  2JJ6

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Organizational Affiliation: 
• Institute of Microbiology, ETH Zürich, Wolfgang-Pauli-Str. 10, CH-8093 Zürich, Switzerland.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PQS (software)

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors and generated by PQS (software)

Macromolecule Content 

• Total Structure Weight: 30.12 kDa 
• Atom Count: 2,344 
• Modeled Residue Count: 267 
• Deposited Residue Count: 268 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
GALECTIN-RELATED PROTEIN	A, B	134	Homo sapiens	Mutation(s): 0
UniProt & NIH Common Fund Data Resources
Find proteins for Q3ZCW2 (Homo sapiens) Explore Q3ZCW2  Go to UniProtKB:  Q3ZCW2
PHAROS:  Q3ZCW2 GTEx:  ENSG00000119862

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.259 (Depositor), 0.203 (DCC) 
• R-Value Work:  0.217 (Depositor), 0.220 (DCC) 
• R-Value Observed: 0.217 (Depositor) 

Space Group: P 3₂ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 78.391	α = 90
b = 78.391	β = 90
c = 89.883	γ = 120

Software Package:

Software Name	Purpose
CNS	refinement
DENZO	data reduction
SCALEPACK	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-05-06 
Deposition Author(s): Thore, S., Walti, M.A., Kunzler, M., Aebi, M.

Revision History  

• Version 1.0: 2008-05-06
  Type: Initial release
  
• Version 1.1: 2011-05-07
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Version format compliance
• Version 1.3: 2018-06-20
  Changes: Data collection, Database references
• Version 1.4: 2023-12-13
  Changes: Data collection, Database references, Other, Refinement description