2KDV | pdb_00002kdv

Solution structure of RNA Pyrophosphohydrolase RppH from Escherichia coli

• PDB DOI: https://doi.org/10.2210/pdb2KDV/pdb

• Classification: HYDROLASE
• Organism(s): Escherichia coli K-12
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2009-01-19 Released: 2010-01-26 
• Deposition Author(s): Bi, Y., Li, H., Jin, C.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 21 
• Selection Criteria: structures with the lowest energy 

Literature

Solution structure of RNA pyrophosphohydrolase RppH from Escherichia coli

Bi, Y., Li, H., Jin, C.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content 

• Total Structure Weight: 19.44 kDa 
• Atom Count: 1,369 
• Modeled Residue Count: 164 
• Deposited Residue Count: 164 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
RNA pyrophosphohydrolase	A	164	Escherichia coli K-12	Mutation(s): 0  Gene Names: rppH, nudH, ygdP, b2830, JW2798 EC: 3.6.1
UniProt
Find proteins for P0A776 (Escherichia coli (strain K12)) Explore P0A776  Go to UniProtKB:  P0A776

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 21 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-01-26 
Deposition Author(s): Bi, Y., Li, H., Jin, C.

Revision History  

• Version 1.0: 2010-01-26
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2022-03-16
  Changes: Data collection, Database references, Derived calculations
• Version 1.3: 2024-05-29
  Changes: Data collection