2KM1 | pdb_00002km1

Solution structure of the N-terminal domain of the yeast protein Dre2


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations 

wwPDB Validation 3D Report Full Report

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This is version 1.4 of the entry. See complete history

Literature

A S-adenosylmethionine methyltransferase-like domain within the essential, Fe-S containing yeast protein Dre2

Soler, N.Craescu, C.T.Gallay, J.Frapart, Y.M.Mansuy, D.Raynal, B.Baldacci, G.Pastore, A.Huang, M.E.Vernis, L.

(2012) FEBS J 

  • DOI: https://doi.org/10.1111/j.1742-4658.2012.08597.x
  • Primary Citation Related Structures: 
    2KM1

  • PubMed Abstract: 

    Yeast Dre2 is an essential Fe-S cluster-containing protein that has been implicated in cytosolic Fe-S protein biogenesis and in cell death regulation in response to oxidative stress. Its absence in yeast can be complemented by the human homologous antiapoptotic protein cytokine-induced apoptosis inhibitor 1 (also known as anamorsin), suggesting at least one common function. Using complementary techniques, we have investigated the biochemical and biophysical properties of Dre2. We show that it contains an N-terminal domain whose structure in solution consists of a stable well-structured monomer with an overall typical S-adenosylmethionine methyltransferase fold lacking two α-helices and a β-strand. The highly conserved C-terminus of Dre2, containing two Fe-S clusters, influences the flexibility of the N-terminal domain. We discuss the hypotheses that the activity of the N-terminal domain could be modulated by the redox activity of Fe-S clusters containing the C-terminus domain in vivo.


  • Organizational Affiliation
    • CNRS UMR2027, Centre Universitaire, Orsay, France.

Macromolecule Content 

  • Total Structure Weight: 15.14 kDa 
  • Atom Count: 921 
  • Modeled Residue Count: 117 
  • Deposited Residue Count: 136 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Protein DRE2136Saccharomyces cerevisiaeMutation(s): 0 
Gene Names: YKR071C
UniProt
Find proteins for P36152 (Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Explore P36152 
Go to UniProtKB:  P36152
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP36152
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 200 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the least restraint violations 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-08-11
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2011-12-14
    Changes: Structure summary
  • Version 1.3: 2012-05-09
    Changes: Database references
  • Version 1.4: 2024-05-01
    Changes: Data collection, Database references