2OAI | pdb_00002oai

The structure of transporter associated domain CorC_HlyC from a Xylella fastidiosa Temecula1 hemolysin.

• PDB DOI: https://doi.org/10.2210/pdb2OAI/pdb

• Classification: TOXIN
• Organism(s): Xylella fastidiosa Temecula1
• Expression System: Escherichia coli BL21
• Mutation(s): Yes 


• Deposited: 2006-12-15 Released: 2007-01-16 
• Deposition Author(s): Cuff, M.E., Volkart, L., Abdullah, J., Binkowski, T.A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free: 
  0.200 (Depositor), 0.201 (DCC) 
• R-Value Work: 
  0.175 (Depositor), 0.172 (DCC) 
• R-Value Observed: 
  0.176 (Depositor) 

Literature

The structure of transporter associated domain CorC_HlyC from a Xylella fastidiosa Temecula1 hemolysin.

Cuff, M.E., Volkart, L., Abdullah, J., Binkowski, T.A., Joachimiak, A.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA,PQS (software)

Macromolecule Content 

• Total Structure Weight: 10.96 kDa 
• Atom Count: 772 
• Modeled Residue Count: 80 
• Deposited Residue Count: 94 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Hemolysin	A	94	Xylella fastidiosa Temecula1	Mutation(s): 3  Gene Names: tlyC
UniProt
Find proteins for Q87DZ3 (Xylella fastidiosa (strain Temecula1 / ATCC 700964)) Explore Q87DZ3  Go to UniProtKB:  Q87DZ3

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
EDO	D [auth A], E [auth A]	1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N
CA	B [auth A], C [auth A]	CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N

Modified Residues  2 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MLY	A	L-PEPTIDE LINKING	C8 H18 N2 O2		LYS
MSE	A	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.80 Å
• R-Value Free:  0.200 (Depositor), 0.201 (DCC) 
• R-Value Work:  0.175 (Depositor), 0.172 (DCC) 
• R-Value Observed: 0.176 (Depositor) 

Space Group: I 2 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 87.905	α = 90
b = 87.905	β = 90
c = 87.905	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
SBC-Collect	data collection
HKL-3000	data reduction
HKL-3000	data scaling
HKL-3000	phasing
SHELXD	phasing
SHELXE	model building
MLPHARE	phasing
DM	phasing
SOLVE	phasing
RESOLVE	phasing
ARP/wARP	model building
CCP4	phasing
O	model building
Coot	model building

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-01-16 
Deposition Author(s): Cuff, M.E., Volkart, L., Abdullah, J., Binkowski, T.A., Joachimiak, A., Midwest Center for Structural Genomics (MCSG)

Revision History  

• Version 1.0: 2007-01-16
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Advisory, Derived calculations, Source and taxonomy, Version format compliance
• Version 1.3: 2023-12-27
  Changes: Data collection, Database references, Derived calculations