2QG8 | pdb_00002qg8

Plasmodium yoelii acyl carrier protein synthase PY06285 with ADP bound

• PDB DOI: https://doi.org/10.2210/pdb2QG8/pdb

• Classification: TRANSFERASE
• Organism(s): Plasmodium yoelii yoelii
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2007-06-28 Released: 2007-07-24 
• Deposition Author(s): Lunin, V.V., Wernimont, A.K., Lew, J., Wasney, G., Kozieradzki, I., Vedadi, M., Bochkarev, A., Arrowsmith, C.H., Sundstrom, M., Weigelt, J., Edwards, A.E., Hui, R., Brokx, S., Altamentova, S., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free: 
  0.240 (Depositor), 0.216 (DCC) 
• R-Value Work: 
  0.193 (Depositor) 
• R-Value Observed: 
  0.195 (Depositor) 

Literature

Plasmodium yoelii acyl carrier protein synthase PY06285 with ADP bound

Lunin, V.V., Wernimont, A.K., Lew, J., Wasney, G., Kozieradzki, I., Vedadi, M., Bochkarev, A., Arrowsmith, C.H., Sundstrom, M., Weigelt, J., Edwards, A.E., Hui, R., Brokx, S., Altamentova, S.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C3  (Explore in 3D)
Global Stoichiometry: Homo 3-mer - A3 

Biological assembly 1 assigned by authors and generated by PISA,PQS (software)

Macromolecule Content 

• Total Structure Weight: 18.8 kDa 
• Atom Count: 1,215 
• Modeled Residue Count: 137 
• Deposited Residue Count: 163 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Acyl Carrier Protein Synthase PY06285	A	163	Plasmodium yoelii yoelii	Mutation(s): 0
UniProt
Find proteins for Q7RB63 (Plasmodium yoelii yoelii) Explore Q7RB63  Go to UniProtKB:  Q7RB63

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
A3P	D [auth A]	ADENOSINE-3'-5'-DIPHOSPHATE C10 H15 N5 O10 P2 WHTCPDAXWFLDIH-KQYNXXCUSA-N
MG	B [auth A], C [auth A]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.00 Å
• R-Value Free:  0.240 (Depositor), 0.216 (DCC) 
• R-Value Work:  0.193 (Depositor) 
• R-Value Observed: 0.195 (Depositor) 

Space Group: P 2₁ 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 86.517	α = 90
b = 86.517	β = 90
c = 86.517	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
CrystalClear	data collection
d*TREK	data reduction
d*TREK	data scaling
MOLREP	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2007-07-24 
Deposition Author(s): Lunin, V.V., Wernimont, A.K., Lew, J., Wasney, G., Kozieradzki, I., Vedadi, M., Bochkarev, A., Arrowsmith, C.H., Sundstrom, M., Weigelt, J., Edwards, A.E., Hui, R., Brokx, S., Altamentova, S., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2007-07-24
  Type: Initial release
  
• Version 1.1: 2008-05-01
  Changes: Version format compliance
• Version 1.2: 2011-07-13
  Changes: Derived calculations, Version format compliance
• Version 1.3: 2024-02-21
  Changes: Data collection, Database references, Derived calculations