2XSS | pdb_00002xss

Crystal structure of GAFb from the human phosphodiesterase 5

PDB DOI: https://doi.org/10.2210/pdb2XSS/pdb

Classification: HYDROLASE
Organism(s): Homo sapiens
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2010-09-30 Released: 2011-05-18
Deposition Author(s): Schlicker, C., Russwurm, M., Steegborn, C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.317 (Depositor), 0.313 (DCC)
R-Value Work:
0.248 (Depositor), 0.244 (DCC)
R-Value Observed:
0.252 (Depositor)

wwPDB Validation 3D Report Full Report

Validation slider image for 2XSS

This is version 1.2 of the entry. See complete history.

Literature

Crystal Structure of the Gaf-B Domain from Human Phosphodiesterase 5.

Russwurm, M., Schlicker, C., Weyand, M., Koesling, D., Steegborn, C.

(2011) Proteins 79: 1682

PubMed: 21425347 Search on PubMed
DOI: https://doi.org/10.1002/prot.22989
Primary Citation Related Structures:
2XSS

Organizational Affiliation

Department of Pharmacology and Toxicology, Ruhr-University Bochum, Germany.

Macromolecule Content

Total Structure Weight: 41.35 kDa
Atom Count: 2,377
Modeled Residue Count: 306
Deposited Residue Count: 362
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
CGMP-SPECIFIC 3', 5'-CYCLIC PHOSPHODIESTERASE	A, B	181	Homo sapiens	Mutation(s): 0 EC: 3.1.4.35
UniProt & NIH Common Fund Data Resources
Find proteins for O76074 (Homo sapiens) Explore O76074 Go to UniProtKB: O76074
PHAROS: O76074 GTEx: ENSG00000138735
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	O76074
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.317 (Depositor), 0.313 (DCC)
R-Value Work: 0.248 (Depositor), 0.244 (DCC)
R-Value Observed: 0.252 (Depositor)

Space Group: P 3₁ 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 64.75	α = 90
b = 64.75	β = 90
c = 145.31	γ = 120

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling
autoSHARP	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2011-05-18

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2011-05-18
Type: Initial release
Version 1.1: 2011-07-13
Changes: Version format compliance
Version 1.2: 2024-05-08
Changes: Data collection, Database references, Other

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.