3C6F | pdb_00003c6f

Crystal structure of protein Bsu07140 from Bacillus subtilis

• PDB DOI: https://doi.org/10.2210/pdb3C6F/pdb

• Classification: STRUCTURAL GENOMICS, UNKNOWN FUNCTION
• Organism(s): Bacillus subtilis
• Expression System: Escherichia coli
• Mutation(s): Yes 


• Deposited: 2008-02-04 Released: 2008-02-19 
• Deposition Author(s): Patskovsky, Y., Min, T., Zhang, A., Adams, J., Groshong, C., Wasserman, S.R., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free: 
  0.288 (Depositor), 0.283 (DCC) 
• R-Value Work: 
  0.233 (Depositor), 0.229 (DCC) 
• R-Value Observed: 
  0.235 (Depositor) 

Literature

Crystal structure of protein Bsu07140 from Bacillus subtilis.

Patskovsky, Y., Min, T., Zhang, A., Adams, J., Groshong, C., Wasserman, S.R., Sauder, J.M., Burley, S.K., Almo, S.C.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C4  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 70.98 kDa 
• Atom Count: 4,566 
• Modeled Residue Count: 549 
• Deposited Residue Count: 612 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
YetF protein	A, B, C, D	153	Bacillus subtilis	Mutation(s): 4  Gene Names: yetF, BSU07140
UniProt
Find proteins for O31533 (Bacillus subtilis (strain 168)) Explore O31533  Go to UniProtKB:  O31533

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
GOL	E [auth D]	GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.50 Å
• R-Value Free:  0.288 (Depositor), 0.283 (DCC) 
• R-Value Work:  0.233 (Depositor), 0.229 (DCC) 
• R-Value Observed: 0.235 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 68.268	α = 90
b = 71.334	β = 111.93
c = 70.094	γ = 90

Software Package:

Software Name	Purpose
SHELX	model building
REFMAC	refinement
MAR345	data collection
HKL-2000	data reduction
HKL-2000	data scaling
SHELXD	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-02-19 
Deposition Author(s): Patskovsky, Y., Min, T., Zhang, A., Adams, J., Groshong, C., Wasserman, S.R., Sauder, J.M., Burley, S.K., Almo, S.C., New York SGX Research Center for Structural Genomics (NYSGXRC)

Revision History  

• Version 1.0: 2008-02-19
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Non-polymer description, Version format compliance
• Version 1.2: 2017-10-25
  Changes: Refinement description
• Version 1.3: 2018-11-14
  Changes: Data collection, Structure summary
• Version 1.4: 2021-02-03
  Changes: Database references, Derived calculations, Structure summary
• Version 1.5: 2021-10-20
  Changes: Database references
• Version 1.6: 2024-02-21
  Changes: Data collection, Refinement description