3EO2

Crystal structure of the RhoGEF domain of human neuroepithelial cell-transforming gene 1 protein

• PDB DOI: https://doi.org/10.2210/pdb3EO2/pdb

• Classification: SPLICING
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2008-09-26 Released: 2008-10-07 
• Deposition Author(s): Nedyalkova, L., Tong, Y., Tempel, W., MacKenzie, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free: 
  0.250 (Depositor), 0.270 (DCC) 
• R-Value Work: 
  0.213 (Depositor), 0.240 (DCC) 
• R-Value Observed: 
  0.215 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of the RhoGEF domain of human neuroepithelial cell-transforming gene 1 protein

Nedyalkova, L., Tong, Y., Tempel, W., MacKenzie, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Park, H.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 27.07 kDa 
• Atom Count: 1,469 
• Modelled Residue Count: 187 
• Deposited Residue Count: 231 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Neuroepithelial cell-transforming gene 1 protein	A	231	Homo sapiens	Mutation(s): 0  Gene Names: NET1, ARHGEF8
UniProt & NIH Common Fund Data Resources
Find proteins for Q7Z628 (Homo sapiens) Explore Q7Z628  Go to UniProtKB:  Q7Z628
PHAROS:  Q7Z628 GTEx:  ENSG00000173848

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
UNX	B [auth A]	UNKNOWN ATOM OR ION X

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.60 Å
• R-Value Free:  0.250 (Depositor), 0.270 (DCC) 
• R-Value Work:  0.213 (Depositor), 0.240 (DCC) 
• R-Value Observed: 0.215 (Depositor) 

Space Group: P 6₄

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 95.629	α = 90
b = 95.629	β = 90
c = 62.887	γ = 120

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
MOLREP	phasing
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2008-10-07 
Deposition Author(s): Nedyalkova, L., Tong, Y., Tempel, W., MacKenzie, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Bochkarev, A., Park, H., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2008-10-07
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Advisory, Version format compliance
• Version 1.2: 2017-10-25
  Changes: Refinement description
• Version 1.3: 2020-10-14
  Changes: Data collection, Database references, Derived calculations
• Version 1.4: 2023-09-06
  Changes: Data collection, Database references, Refinement description