3H3M | pdb_00003h3m

Crystal structure of flagellar protein FliT from Bordetella bronchiseptica

PDB DOI: https://doi.org/10.2210/pdb3H3M/pdb

Classification: STRUCTURAL GENOMICS
Organism(s): Bordetella bronchiseptica
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2009-04-16 Released: 2009-04-28
Deposition Author(s): Shumilin, I.A., Wang, S., Chruszcz, M., Xu, X., Le, B., Cui, H., Savchenko, A., Edwards, A.M., Joachimiak, A., Minor, W., Midwest Center for Structural Genomics (MCSG)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free:
0.271 (Depositor), 0.273 (DCC)
R-Value Work:
0.222 (Depositor)
R-Value Observed:
0.225 (Depositor)

wwPDB Validation 3D Report Full Report

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This is version 2.0 of the entry. See complete history.

Literature

Crystal structure of flagellar protein FliT from Bordetella bronchiseptica

Shumilin, I.A., Wang, S., Chruszcz, M., Xu, X., Le, B., Cui, H., Savchenko, A., Edwards, A.M., Joachimiak, A., Minor, W.

To be published.

Macromolecule Content

Total Structure Weight: 28.73 kDa
Atom Count: 1,306
Modeled Residue Count: 171
Deposited Residue Count: 252
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Flagellar protein FliT	A, B	126	Bordetella bronchiseptica	Mutation(s): 0 Gene Names: BB2593, fliT
UniProt
Find proteins for A0A0H3LVQ9 (Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)) Explore A0A0H3LVQ9 Go to UniProtKB: A0A0H3LVQ9
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A0H3LVQ9
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
UNL Query on UNL Download:Ideal Coordinates CCD File	C [auth B]	Unknown ligand		Interactions Focus chain C [auth B]

Modified Residues 1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE Query on MSE	A, B	L-PEPTIDE LINKING	C₅ H₁₁ N O₂ Se		MET

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.50 Å
R-Value Free: 0.271 (Depositor), 0.273 (DCC)
R-Value Work: 0.222 (Depositor)
R-Value Observed: 0.225 (Depositor)

Space Group: P 4₁ 2₁ 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 67.751	α = 90
b = 67.751	β = 90
c = 82.289	γ = 90

Software Package:

Software Name	Purpose
HKL-3000	data collection
HKL-3000	phasing
MLPHARE	phasing
DM	model building
SHELXD	phasing
RESOLVE	model building
REFMAC	refinement
HKL-3000	data reduction
HKL-3000	data scaling
DM	phasing
RESOLVE	phasing

Structure Validation

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View more in-depth experimental data

Entry History

Deposition Data

Released Date: 2009-04-28

Deposition Author(s):

Midwest Center for Structural Genomics (MCSG)

Revision History (Full details and data files)

Version 1.0: 2009-04-28
Type: Initial release
Version 1.1: 2011-07-13
Changes: Advisory, Version format compliance
Version 1.2: 2022-04-13
Changes: Database references, Derived calculations, Structure summary
Version 1.3: 2024-11-06
Changes: Data collection, Structure summary
Version 2.0: 2025-02-12
Changes: Atomic model, Data collection, Derived calculations, Non-polymer description, Structure summary

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.