3HTI

Crystal structure of multidrug binding protein EbrR complexed with malachite green


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.286 
  • R-Value Work: 0.254 
  • R-Value Observed: 0.254 

Starting Model: experimental
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wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Structural plasticity is key to multiple ligand binding by the multidrug binding regulator EbrR

Dong, J.Ni, L.Schumacher, M.Brennan, R.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
EbrA repressor217Streptomyces lividansMutation(s): 0 
Gene Names: ebrR
UniProt
Find proteins for Q79SH7 (Streptomyces lividans)
Explore Q79SH7 
Go to UniProtKB:  Q79SH7
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ79SH7
Sequence Annotations
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  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
MGR
Query on MGR

Download Ideal Coordinates CCD File 
B [auth A]MALACHITE GREEN
C23 H25 N2
VFCNQNZNPKRXIT-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.286 
  • R-Value Work: 0.254 
  • R-Value Observed: 0.254 
  • Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 59.91α = 90
b = 59.91β = 90
c = 110.236γ = 120
Software Package:
Software NamePurpose
CrystalCleardata collection
PHASERphasing
CNSrefinement
d*TREKdata reduction
d*TREKdata scaling

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2010-07-14
    Type: Initial release
  • Version 1.1: 2011-07-13
    Changes: Version format compliance
  • Version 1.2: 2023-09-06
    Changes: Data collection, Database references, Derived calculations, Refinement description