Download MendeleySNAP-tag structure
Schmitt, S., Mollwitz, B., Pojer, F., Bannwarth, M., Schiltz, M., Johnsson, K.To be published.
3L00
Crystal structure of benzylated SNAP-tag
- PDB DOI: https://doi.org/10.2210/pdb3L00/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2009-12-09 Released: 2010-12-15
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.209 (Depositor), 0.220 (DCC)
- R-Value Work: 0.184 (Depositor), 0.190 (DCC)
- R-Value Observed: 0.185 (Depositor)
Starting Model: experimental
View more details
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
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(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| SNAP-tag | 182 | Homo sapiens | Mutation(s): 0 EC: 2.1.1.63 |  | |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| ZN Query on ZN | B [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| BCS Query on BCS | A | L-PEPTIDE LINKING | C10 H13 N O2 S |  | CYS |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.70 Å
- R-Value Free: 0.209 (Depositor), 0.220 (DCC)
- R-Value Work: 0.184 (Depositor), 0.190 (DCC)
- R-Value Observed: 0.185 (Depositor)
Space Group: P 43 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 77.77 | α = 90 |
| b = 77.77 | β = 90 |
| c = 64.88 | γ = 90 |
| Software Name | Purpose |
|---|---|
| CCP4 | model building |
| REFMAC | refinement |
| XDS | data reduction |
| XDS | data scaling |
| CCP4 | phasing |
Entry History
Deposition Data
- Released Date: 2010-12-15 Deposition Author(s): Schmitt, S., Pojer, F., Schiltz, M., Johnsson, K.
Revision History (Full details and data files)
- Version 1.0: 2010-12-15
Type: Initial release - Version 1.1: 2011-07-13
Changes: Version format compliance - Version 1.2: 2023-11-01
Changes: Data collection, Database references, Derived calculations, Refinement description
