3NIE | pdb_00003nie

Crystal Structure of PF11_0147

• PDB DOI: https://doi.org/10.2210/pdb3NIE/pdb

• Classification: TRANSFERASE
• Organism(s): Plasmodium falciparum
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2010-06-15 Released: 2010-08-11 
• Deposition Author(s): Wernimont, A.K., Hutchinson, A., Sullivan, H., MacKenzie, F., Kozieradzki, I., Chau, I., Lew, J., Senisterra, G., Cossar, D., Amani, M., Artz, J.D., Bochkarev, A., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Hui, R., Hills, T., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free: 
  0.268 (Depositor), 0.263 (DCC) 
• R-Value Work: 
  0.223 (Depositor), 0.217 (DCC) 
• R-Value Observed: 
  0.225 (Depositor) 

Starting Model: experimental

Literature

Crystal Structure of PF11_0147

Wernimont, A.K., Hutchinson, A., Sullivan, H., MacKenzie, F., Kozieradzki, I., Chau, I., Lew, J., Senisterra, G., Cossar, D., Amani, M., Artz, J.D., Bochkarev, A., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Hui, R., Hills, T.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Biological Assembly 3  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 3 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 101.31 kDa 
• Atom Count: 5,973 
• Modeled Residue Count: 736 
• Deposited Residue Count: 858 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MAP2 kinase	A, B	429	Plasmodium falciparum	Mutation(s): 0  Gene Names: map2 EC: 2.7.11.24
UniProt
Find proteins for Q7KQK7 (Plasmodium falciparum (isolate 3D7)) Explore Q7KQK7  Go to UniProtKB:  Q7KQK7

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
ANP	C [auth A], D [auth B]	PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER C10 H17 N6 O12 P3 PVKSNHVPLWYQGJ-KQYNXXCUSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.30 Å
• R-Value Free:  0.268 (Depositor), 0.263 (DCC) 
• R-Value Work:  0.223 (Depositor), 0.217 (DCC) 
• R-Value Observed: 0.225 (Depositor) 

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 63.388	α = 90
b = 107.355	β = 109.65
c = 70.787	γ = 90

Software Package:

Software Name	Purpose
DENZO	data reduction
SCALEPACK	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2010-08-11 
Deposition Author(s): Wernimont, A.K., Hutchinson, A., Sullivan, H., MacKenzie, F., Kozieradzki, I., Chau, I., Lew, J., Senisterra, G., Cossar, D., Amani, M., Artz, J.D., Bochkarev, A., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Weigelt, J., Hui, R., Hills, T., Structural Genomics Consortium (SGC)

Revision History  

• Version 1.0: 2010-08-11
  Type: Initial release
  
• Version 1.1: 2011-07-13
  Changes: Version format compliance
• Version 1.2: 2012-06-20
  Changes: Database references
• Version 1.3: 2017-11-08
  Changes: Refinement description
• Version 1.4: 2023-09-06
  Changes: Data collection, Database references, Derived calculations, Refinement description