3OSX | pdb_00003osx

Crystal Structure of Apical Domain of Insecticidal GroEL from Xenorhapdus nematophila

PDB DOI: https://doi.org/10.2210/pdb3OSX/pdb

Classification: CHAPERONE
Organism(s): Xenorhabdus nematophila
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2010-09-10 Released: 2011-10-05
Deposition Author(s): Viswanathan, R., Arockiasamy, A.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.55 Å
R-Value Free:
0.210 (Depositor), 0.136 (DCC)
R-Value Work:
0.148 (Depositor), 0.195 (DCC)
R-Value Observed:
0.205 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of Apical Domain of Insecticidal GroEL from Xenorhapdus nematophila

Viswanathan, R., Krishnadas, B., Shashi, K., Iyer, L.M., Aravind, L., Nirupama, B., Arockiasamy, A.

To be published.

Macromolecule Content

Total Structure Weight: 22.01 kDa
Atom Count: 1,748
Modeled Residue Count: 190
Deposited Residue Count: 201
Unique protein chains: 1

Macromolecules

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Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
60 kDa chaperonin	A	201	Xenorhabdus nematophila	Mutation(s): 0 Gene Names: groEL, groL EC: 5.6.1.7
UniProt
Find proteins for Q6Y3X3 (Xenorhabdus nematophila) Explore Q6Y3X3 Go to UniProtKB: Q6Y3X3
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q6Y3X3
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.55 Å
R-Value Free: 0.210 (Depositor), 0.136 (DCC)
R-Value Work: 0.148 (Depositor), 0.195 (DCC)
R-Value Observed: 0.205 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 39.983	α = 90
b = 61.882	β = 90
c = 75.332	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
MAR345dtb	data collection
DENZO	data reduction
SCALEPACK	data scaling
Auto-Rickshaw	phasing

Structure Validation

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Entry History

Deposition Data

Released Date: 2011-10-05

Deposition Author(s):

Viswanathan, R.

Arockiasamy, A.

Revision History (Full details and data files)

Version 1.0: 2011-10-05
Type: Initial release
Version 1.1: 2023-11-01
Changes: Data collection, Database references, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.