3URH

Crystal structure of a dihydrolipoamide dehydrogenase from Sinorhizobium meliloti 1021


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free: 
    0.227 (Depositor), 0.233 (DCC) 
  • R-Value Work: 
    0.184 (Depositor), 0.192 (DCC) 
  • R-Value Observed: 
    0.186 (Depositor) 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted FADClick on this verticalbar to view details

This is version 1.1 of the entry. See complete history


Literature

Crystal structure of a dihydrolipoamide dehydrogenase from Sinorhizobium meliloti 1021

Kumaran, D.Almo, S.C.Swaminathan, S.

To be published.

Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Dihydrolipoyl dehydrogenase
A, B
491Sinorhizobium meliloti 1021Mutation(s): 0 
Gene Names: lpdA2R03048SMc02487
EC: 1.8.1.4
UniProt
Find proteins for Q92LK0 (Rhizobium meliloti (strain 1021))
Explore Q92LK0 
Go to UniProtKB:  Q92LK0
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ92LK0
Sequence Annotations
Expand
  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.90 Å
  • R-Value Free:  0.227 (Depositor), 0.233 (DCC) 
  • R-Value Work:  0.184 (Depositor), 0.192 (DCC) 
  • R-Value Observed: 0.186 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 74.433α = 90
b = 104.716β = 90
c = 120.622γ = 90
Software Package:
Software NamePurpose
CBASSdata collection
SHELXDphasing
SHELXEmodel building
ARP/wARPmodel building
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted FADClick on this verticalbar to view details

Entry History 

Revision History  (Full details and data files)

  • Version 1.0: 2011-12-14
    Type: Initial release
  • Version 1.1: 2024-10-16
    Changes: Data collection, Database references, Derived calculations, Structure summary