4DYP

Crystal Structure of WSN/A Influenza Nucleoprotein with BMS-831780 Ligand Bound

PDB DOI: https://doi.org/10.2210/pdb4DYP/pdb

Classification: VIRAL PROTEIN
Organism(s): Influenza A virus (A/WSN/1933(H1N1))
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2012-02-29 Released: 2013-03-06
Deposition Author(s): Lewis, H.A., Baldwin, E.T., Steinbacher, S., Maskos, K., Mortl, M., Kiefersauer, R., Edavettal, S., McDonnell, P.A., Pearce, B.C., Langley, D.R.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.82 Å
R-Value Free:
0.294 (Depositor), 0.290 (DCC)
R-Value Work:
0.254 (Depositor), 0.250 (DCC)
R-Value Observed:
0.256 (Depositor)

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.1 of the entry. See complete history.

Literature

To be determined

Lewis, H.A., Baldwin, E.T., Steinbacher, S., Maskos, K., Mortl, M., Kiefersauer, R., Edavettal, S., McDonnell, P.A., Pearce, B.C., Langley, D.R.

To be published.

Macromolecule Content

Total Structure Weight: 114.56 kDa
Atom Count: 5,935
Modelled Residue Count: 848
Deposited Residue Count: 998
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Nucleocapsid protein	A, B	499	Influenza A virus (A/WSN/1933(H1N1))	Mutation(s): 0 Gene Names: NP
UniProt
Find proteins for Q1K9H2 (Influenza A virus (strain A/Wilson-Smith/1933 H1N1)) Explore Q1K9H2 Go to UniProtKB: Q1K9H2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q1K9H2
Sequence Annotations Expand
Reference Sequence LOADING

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
0MS Query on 0MS Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth B] mmCIF format, chain C [auth A] mmCIF format, chain D [auth B]	C [auth A], D [auth B]	[4-(5-bromanyl-3-methyl-pyridin-2-yl)piperazin-1-yl]-[3-(2-chlorophenyl)-5-methyl-1,2-oxazol-4-yl]methanone C₂₁ H₂₀ Br Cl N₄ O₂ FJRSKYVUWHZUJT-UHFFFAOYSA-N		Interactions Focus chain C [auth A] Focus chain D [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.82 Å
R-Value Free: 0.294 (Depositor), 0.290 (DCC)
R-Value Work: 0.254 (Depositor), 0.250 (DCC)
R-Value Observed: 0.256 (Depositor)

Space Group: P 2₁ 3

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 146.55	α = 90
b = 146.55	β = 90
c = 146.55	γ = 90

Software Package:

Software Name	Purpose
XSCALE	data scaling
REFMAC	refinement
PDB_EXTRACT	data extraction

Structure Validation

View Full Validation Report

Ligand Structure Quality Assessment

Entry History

Deposition Data

Released Date: 2013-03-06

Deposition Author(s):

Steinbacher, S.

Kiefersauer, R.

McDonnell, P.A.

Revision History (Full details and data files)

Version 1.0: 2013-03-06
Type: Initial release
Version 1.1: 2024-02-28
Changes: Data collection, Database references, Derived calculations

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.