4JIS

Crystal structure of ribitol 5-phosphate cytidylyltransferase (TarI) from Bacillus subtilis

• PDB DOI: https://doi.org/10.2210/pdb4JIS/pdb

• Classification: TRANSFERASE
• Organism(s): Bacillus spizizenii str. W23
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2013-03-06 Released: 2014-03-12 
• Deposition Author(s): Yang, C.S., Chen, S.C., Chen, Y.R., Kuan, S.M., Liu, Y.H., Chen, Y.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.77 Å
• R-Value Free: 
  0.241 (Depositor), 0.240 (DCC) 
• R-Value Work: 
  0.206 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.208 (Depositor) 

Starting Model: experimental

Literature

Crystal structure of ribitol 5-phosphate cytidylyltransferase (TarI) from Bacillus subtilis

Yang, C.S., Chen, S.C., Chen, Y.R., Kuan, S.M., Liu, Y.H., Chen, Y.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 56.28 kDa 
• Atom Count: 3,841 
• Modelled Residue Count: 440 
• Deposited Residue Count: 494 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
ribitol-5-phosphate cytidylyltransferase	A, B	247	Bacillus spizizenii str. W23	Mutation(s): 0  Gene Names: BSUW23_17565, ispD, tarI EC: 2.7.7.40
UniProt
Find proteins for Q8RKI9 (Bacillus spizizenii (strain ATCC 23059 / NRRL B-14472 / W23)) Explore Q8RKI9  Go to UniProtKB:  Q8RKI9

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.77 Å
• R-Value Free:  0.241 (Depositor), 0.240 (DCC) 
• R-Value Work:  0.206 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.208 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 103.747	α = 90
b = 60.977	β = 113.44
c = 91.808	γ = 90

Software Package:

Software Name	Purpose
HKL-2000	data collection
PHASER	phasing
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2014-03-12 
Deposition Author(s): Yang, C.S., Chen, S.C., Chen, Y.R., Kuan, S.M., Liu, Y.H., Chen, Y.

Revision History  

• Version 1.0: 2014-03-12
  Type: Initial release
  
• Version 1.1: 2023-11-08
  Changes: Data collection, Database references, Refinement description