Crystal structure of 2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase
Kobayashi, J., Yoshida, H., Kamitori, S., Hayashi, H., Mizutani, K., Takahashi, N., Mikami, B., Yagi, T.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
2-methyl-3-hydroxypyridine-5-carboxylic acid oxygenase | 379 | Mesorhizobium japonicum MAFF 303099 | Mutation(s): 0  Gene Names: mlr6788 EC: 1.14.12.4 | ![]() | |
UniProt | |||||
Find proteins for Q988D3 (Mesorhizobium japonicum (strain LMG 29417 / CECT 9101 / MAFF 303099)) Explore Q988D3  Go to UniProtKB:  Q988D3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q988D3 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
FAD Query on FAD | C [auth A], J [auth B] | FLAVIN-ADENINE DINUCLEOTIDE C27 H33 N9 O15 P2 VWWQXMAJTJZDQX-UYBVJOGSSA-N | |||
5PR Query on 5PR | E [auth A], L [auth B] | 5-hydroxy-4-(hydroxymethyl)-6-methylpyridine-3-carboxylic acid C8 H9 N O4 VJZTVPVXKYQRJZ-UHFFFAOYSA-N | |||
GOL Query on GOL | F [auth A] G [auth A] H [auth A] I [auth A] M [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
BME Query on BME | D [auth A], K [auth B] | BETA-MERCAPTOETHANOL C2 H6 O S DGVVWUTYPXICAM-UHFFFAOYSA-N | |||
EDO Query on EDO | Q [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 111.446 | α = 90 |
b = 129.526 | β = 122.7 |
c = 89.565 | γ = 90 |
Software Name | Purpose |
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HKL-2000 | data collection |
MOLREP | phasing |
PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |