5F8U

Ligand occupancy in crystal structure of beta1-adrenergic receptor previously submitted by Huang et al

• PDB DOI: https://doi.org/10.2210/pdb5F8U/pdb

• Classification: SIGNALING PROTEIN
• Organism(s): Meleagris gallopavo
• Expression System: Trichoplusia ni
• Mutation(s): Yes 
• Membrane Protein: Yes  PDBTMMemProtMD


• Deposited: 2015-12-09 Released: 2015-12-23 
• Deposition Author(s): Leslie, A.G.W., Warne, A., Tate, C.G.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.35 Å
• R-Value Free: 
  0.382 (Depositor), 0.380 (DCC) 
• R-Value Work: 
  0.344 (Depositor), 0.350 (DCC) 
• R-Value Observed: 
  0.346 (Depositor) 

Starting Model: experimental

Re-refinement Note

This entry reflects an alternative modeling of the original data in: 4GPO

Literature

Ligand occupancy in crystal structure of Beta1 adrenergic G protein coupled receptor

Leslie, A.G.W., Warne, T., Tate, C.G.

(2015) Nat Struct Mol Biol 22: 941-942

• PubMed: 26643842 
• DOI: https://doi.org/10.1038/nsmb.3130
• Primary Citation of Related Structures:  
  5F8U

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Organizational Affiliation: 

Medical Research Council (MRC) Laboratory of Molecular Biology, Cambridge, UK.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Biological Assembly 2  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 2 assigned by authors.

Macromolecule Content

• Total Structure Weight: 72.08 kDa 
• Atom Count: 4,432 
• Modelled Residue Count: 552 
• Deposited Residue Count: 626 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Beta-1 adrenergic receptor	A [auth B], B [auth A]	313	Meleagris gallopavo	Mutation(s): 8  Gene Names: ADRB1 Membrane Entity: Yes
UniProt
Find proteins for P07700 (Meleagris gallopavo) Explore P07700  Go to UniProtKB:  P07700

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
P32	C [auth B], D [auth A]	4-{[(2S)-3-(tert-butylamino)-2-hydroxypropyl]oxy}-3H-indole-2-carbonitrile C16 H21 N3 O2 CQEFAUFOQSCRMZ-LBPRGKRZSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.35 Å
• R-Value Free:  0.382 (Depositor), 0.380 (DCC) 
• R-Value Work:  0.344 (Depositor), 0.350 (DCC) 
• R-Value Observed: 0.346 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 229.66	α = 90
b = 79.59	β = 101.83
c = 69.04	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
XDS	data reduction
XSCALE	data scaling

Structure Validation

Entry History 

Deposition Data

• Released Date: 2015-12-23 
Deposition Author(s): Leslie, A.G.W., Warne, A., Tate, C.G.

Revision History  

• Version 1.0: 2015-12-23
  Type: Initial release
  
• Version 1.1: 2018-03-07
  Changes: Data collection
• Version 1.2: 2018-12-26
  Changes: Data collection, Experimental preparation
• Version 1.3: 2019-04-03
  Changes: Data collection, Source and taxonomy
• Version 1.4: 2024-01-10
  Changes: Data collection, Database references, Refinement description
• Version 1.5: 2024-11-20
  Changes: Structure summary