5GIY | pdb_00005giy

HSA-Palmitic acid-[RuCl5(ind)]2-

• PDB DOI: https://doi.org/10.2210/pdb5GIY/pdb

• Classification: PEPTIDE BINDING PROTEIN
• Organism(s): Homo sapiens
• Expression System: Pichia kudriavzevii
• Mutation(s): No 


• Deposited: 2016-06-25 Released: 2017-07-19 
• Deposition Author(s): Yang, F., Wang, T.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.54 Å
• R-Value Free: 
  0.279 (Depositor), 0.280 (DCC) 
• R-Value Work: 
  0.224 (Depositor), 0.230 (DCC) 
• R-Value Observed: 
  0.227 (Depositor) 

Starting Model: experimental

Literature

Structure of HSA-Palmitic acid-[RuCl5(ind)]2-

Yang, F., Wang, T.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 68.55 kDa 
• Atom Count: 4,743 
• Modelled Residue Count: 581 
• Deposited Residue Count: 581 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Serum albumin	A	581	Homo sapiens	Mutation(s): 0  Gene Names: ALB
UniProt & NIH Common Fund Data Resources
Find proteins for P02768 (Homo sapiens) Explore P02768  Go to UniProtKB:  P02768
PHAROS:  P02768 GTEx:  ENSG00000163631

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
7GE	H [auth A], I [auth A]	pentakis(chloranyl)-(1~{H}-indazol-2-ium-2-yl)ruthenium(1-) C7 H6 Cl5 N2 Ru BDILZFSGPXXJCX-UHFFFAOYSA-I
PLM	B [auth A], C [auth A], D [auth A], E [auth A], F [auth A], G [auth A]	PALMITIC ACID C16 H32 O2 IPCSVZSSVZVIGE-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.54 Å
• R-Value Free:  0.279 (Depositor), 0.280 (DCC) 
• R-Value Work:  0.224 (Depositor), 0.230 (DCC) 
• R-Value Observed: 0.227 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 185.845	α = 90
b = 38.71	β = 105.12
c = 96.07	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
HKL-2000	data reduction
HKL-2000	data scaling
PHENIX	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-07-19 
Deposition Author(s): Yang, F., Wang, T.

Revision History  

• Version 1.0: 2017-07-19
  Type: Initial release
  
• Version 1.1: 2023-11-08
  Changes: Data collection, Database references, Derived calculations, Refinement description