5IEJ | pdb_00005iej

Solution structure of the BeF3-activated conformation of SdrG from Pseudomonas melonis Fr1


Experimental Data Snapshot

  • Method: SOLUTION NMR
  • Conformers Calculated: 30 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

wwPDB Validation 3D Report Full Report

Validation slider image for 5IEJ

This is version 1.3 of the entry. See complete history

Literature

Role of the PFXFATG[G/Y] Motif in the Activation of SdrG, a Response Regulator Involved in the Alphaproteobacterial General Stress Response.

Campagne, S.Dintner, S.Gottschlich, L.Thibault, M.Bortfeld-Miller, M.Kaczmarczyk, A.Francez-Charlot, A.Allain, F.H.Vorholt, J.A.

(2016) Structure 24: 1237-1247

  • DOI: https://doi.org/10.1016/j.str.2016.05.015
  • Primary Citation Related Structures: 
    5IEB, 5IEJ

  • PubMed Abstract: 

    Two-component systems are major signal transduction pathways, which consist of histidine kinases and response regulators that communicate through phosphorylation. Here, we highlight a distinct class of single-domain response regulators containing the PFXFATG[G/Y] motif that are activated by a mechanism distinct from the Y-T coupling described for prototypical receiver domains. We first solved the structures of inactive and active SdrG, a representative of the FAT GUY family, and then biochemically and genetically characterized variants in which residues in this motif were mutated. Our results support a model of activation mainly driven by a conserved lysine and reveal that the rotation of the threonine induces the reorganization of several aromatic residues in and around the PFXFATG[G/Y] motif to generate intermediates resembling those occurring during classical Y-T coupling. Overall, this helps define a new subfamily of response regulators that emerge as important players in physiological adaptation.


  • Organizational Affiliation
    • Institute of Microbiology, ETH Zurich, Vladimir-Prelog-Weg 1-5/10, 8093 Zürich, Switzerland; Institute of Molecular Biology and Biophysics, ETH Zurich, Hönggerbergring 64, 8093 Zürich, Switzerland. Electronic address: sebastien.campagne@mol.biol.ethz.ch.

Macromolecule Content 

  • Total Structure Weight: 13.89 kDa 
  • Atom Count: 870 
  • Modeled Residue Count: 118 
  • Deposited Residue Count: 130 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
SdrG130Sphingomonas melonis FR1Mutation(s): 0 
UniProt
Find proteins for A0A1C7D1A8 (Sphingomonas melonis FR1)
Explore A0A1C7D1A8 
Go to UniProtKB:  A0A1C7D1A8
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A1C7D1A8
Sequence Annotations
Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: SOLUTION NMR
  • Conformers Calculated: 30 
  • Conformers Submitted: 20 
  • Selection Criteria: structures with the lowest energy 

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2016-07-20
    Type: Initial release
  • Version 1.1: 2016-08-17
    Changes: Database references
  • Version 1.2: 2019-05-08
    Changes: Data collection
  • Version 1.3: 2024-05-15
    Changes: Data collection, Database references