5JDP | pdb_00005jdp

E73V mutant of the human voltage-dependent anion channel

• PDB DOI: https://doi.org/10.2210/pdb5JDP/pdb
• BMRB: 30065

• Classification: MEMBRANE PROTEIN
• Organism(s): Homo sapiens
• Expression System: Escherichia coli
• Mutation(s): No 
• Membrane Protein: Yes  OPMPDBTM


• Deposited: 2016-04-17 Released: 2016-08-10 
• Deposition Author(s): Jaremko, M., Jaremko, L., Villinger, S., Schmidt, C., Giller, K., Griesinger, C., Becker, S., Zweckstetter, M.
• Funding Organization(s): European Research Council

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Submitted: 20 

Literature

High-Resolution NMR Determination of the Dynamic Structure of Membrane Proteins.

Jaremko, M., Villinger, S., Schmidt, C.D., Griesinger, C., Becker, S., Zweckstetter, M.

(2016) Angew Chem Int Ed Engl 55: 10518-10521

• PubMed: 27461260 
• DOI: https://doi.org/10.1002/anie.201602639
• Primary Citation Related Structures: 
  5JDP


• PubMed Abstract: 
  

  (15) N spin-relaxation rates are demonstrated to provide critical information about the long-range structure and internal motions of membrane proteins. Combined with an improved calculation method, the relaxation-rate-derived structure of the 283-residue human voltage-dependent anion channel revealed an anisotropically shaped barrel with a rigidly attached N-terminal helix. Our study thus establishes an NMR spectroscopic approach to determine the structure and dynamics of mammalian membrane proteins at high accuracy and resolution.

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Organizational Affiliation: 
• Max-Planck-Institut für Biophysikalische Chemie, Am Fassberg 11, 37077, Göttingen, Germany.
Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE), Von-Siebold-Strasse 3a, 37075, Göttingen, Germany.
Max-Planck-Institut für Biophysikalische Chemie, Am Fassberg 11, 37077, Göttingen, Germany. [e-mail].
Deutsches Zentrum für Neurodegenerative Erkrankungen (DZNE), Von-Siebold-Strasse 3a, 37075, Göttingen, Germany. [e-mail].
Department of Neurology, University Medical Center Göttingen, University of Göttingen, Waldweg 33, 37073, Göttingen, Germany. [e-mail].

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 30.98 kDa 
• Atom Count: 2,184 
• Modeled Residue Count: 285 
• Deposited Residue Count: 285 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Voltage-dependent anion-selective channel protein 1	A	285	Homo sapiens	Mutation(s): 0  Gene Names: VDAC1, VDAC Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P21796 (Homo sapiens) Explore P21796  Go to UniProtKB:  P21796
PHAROS:  P21796 GTEx:  ENSG00000213585

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Submitted: 20 

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2016-08-10 
Deposition Author(s): Jaremko, M., Jaremko, L., Villinger, S., Schmidt, C., Giller, K., Griesinger, C., Becker, S., Zweckstetter, M.

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Funding Organization	Location	Grant Number
European Research Council	Germany	282008

Revision History  

• Version 1.0: 2016-08-10
  Type: Initial release
  
• Version 1.1: 2016-08-31
  Changes: Database references
• Version 1.2: 2019-05-08
  Changes: Data collection
• Version 1.3: 2024-06-19
  Changes: Data collection, Database references, Experimental preparation