5LBJ | pdb_00005lbj

Solution structure of the bacterial toxin LdrD in Tetrafluorethanol

• PDB DOI: https://doi.org/10.2210/pdb5LBJ/pdb
• BMRB: 34011

• Classification: TOXIN
• Organism(s): Escherichia coli
• Mutation(s): No 
• Membrane Protein: Yes  OPMMemProtMD


• Deposited: 2016-06-16 Released: 2017-08-02 
• Deposition Author(s): Meyer, N.H.

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Experimental Data Snapshot

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Literature

Solution structure of the bacterial toxin LdrD in Tetrafluorethanol

Meyer, N.H.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 generated by PISA (software)

Macromolecule Content 

• Total Structure Weight: 3.92 kDa 
• Atom Count: 275 
• Modeled Residue Count: 35 
• Deposited Residue Count: 35 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Small toxic polypeptide LdrD	A	35	Escherichia coli	Mutation(s): 0  Membrane Entity: Yes
UniProt
Find proteins for Q6BF25 (Escherichia coli (strain K12)) Explore Q6BF25  Go to UniProtKB:  Q6BF25

Experimental Data & Validation

Experimental Data

• Method: SOLUTION NMR
• Conformers Calculated: 100 
• Conformers Submitted: 20 
• Selection Criteria: structures with the lowest energy 

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-08-02 
Deposition Author(s): Meyer, N.H.

Revision History  

• Version 1.0: 2017-08-02
  Type: Initial release
  
• Version 1.1: 2019-05-08
  Changes: Data collection
• Version 1.2: 2024-06-19
  Changes: Data collection, Database references