5TSK

Molecular Dynamics Flexible Fitting Model of Coxsackievirus A16 empty Procapsid VP1 Subunit

PDB DOI: https://doi.org/10.2210/pdb5TSK/pdb
EM Map EMD-8325: EMDB EMDataResource

Classification: VIRUS
Organism(s): Coxsackievirus A16
Mutation(s): No

Deposited: 2016-10-29 Released: 2017-02-01
Deposition Author(s): Fan, C., Cong, Y., Ye, X., Huang, Z.

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 6.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.3 of the entry. See complete history.

Literature

Structural alteration and surface modifi cation of coxsackievirus A16 capsids by beta-propiolactone treatment

Chen, F., Ye, X., Ku, Z.I., Kong, L.l., Liu, Q., Xu, C., Cong, Y., Huang, Z.

(2017) J Virol

Macromolecule Content

Total Structure Weight: 33.09 kDa
Atom Count: 1,752
Modelled Residue Count: 219
Deposited Residue Count: 297
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
coxsackievirus A16 empty procapsid VP1 subunit	A	297	Coxsackievirus A16	Mutation(s): 0
UniProt
Find proteins for A9LXZ4 (Coxsackievirus A16) Explore A9LXZ4 Go to UniProtKB: A9LXZ4
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	A9LXZ4
Sequence Annotations Expand
Reference Sequence LOADING

Experimental Data & Validation

Experimental Data

Method: ELECTRON MICROSCOPY
Resolution: 6.50 Å
Aggregation State: PARTICLE
Reconstruction Method: SINGLE PARTICLE

EM Software:

Task	Software Package	Version
RECONSTRUCTION	jspr
MODEL REFINEMENT	NAMD	2.1

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2017-02-01

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2017-02-01
Type: Initial release
Version 1.1: 2019-10-23
Changes: Data collection, Other
Version 1.2: 2019-12-11
Changes: Experimental preparation
Version 1.3: 2024-03-20
Changes: Data collection, Database references, Derived calculations, Refinement description

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.