5ULC

PLASMODIUM FALCIPARUM BROMODOMAIN-CONTAINING PROTEIN PF10_0328

• PDB DOI: https://doi.org/10.2210/pdb5ULC/pdb
• Entry: 5ULC supersedes: 3FKM

• Classification: SIGNALING PROTEIN
• Organism(s): Plasmodium falciparum 3D7
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2017-01-24 Released: 2017-02-22 
• Deposition Author(s): Wernimont, A.K., Amaya, M.F., Lam, A., Ali, A., Zhang, A.Z., Kenzina, L., Lin, Y.H., MacKenzie, F., Kozieradzki, I., Cossar, D., Schapira, M., Bochkarev, A., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Weigelt, J., Hui, R., Walker, J.R., Qiu, W., Brand, V., Structural Genomics Consortium (SGC)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free: 
  0.232 (Depositor), 0.240 (DCC) 
• R-Value Work: 
  0.216 (Depositor), 0.210 (DCC) 
• R-Value Observed: 
  0.217 (Depositor) 

Starting Model: experimental

Literature

PLASMODIUM FALCIPARUM BROMODOMAIN-CONTAINING PROTEIN PF10_0328

Wernimont, A.K., Amaya, M.F., Lam, A., Ali, A., Zhang, A.Z., Kenzina, L., Lin, Y.H., MacKenzie, F., Kozieradzki, I., Cossar, D., Schapira, M., Bochkarev, A., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Weigelt, J., Hui, R., Walker, J.R., Qiu, W., Brand, V., Structural Genomics Consortium (SGC)

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 19.77 kDa 
• Atom Count: 1,016 
• Modelled Residue Count: 122 
• Deposited Residue Count: 166 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Bromodomain protein 1	A [auth X]	166	Plasmodium falciparum 3D7	Mutation(s): 0  Gene Names: PF10_0328, PF3D7_1033700
UniProt
Find proteins for Q8IJ72 (Plasmodium falciparum (isolate 3D7)) Explore Q8IJ72  Go to UniProtKB:  Q8IJ72

Small Molecules

Modified Residues  1 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
MSE	A [auth X]	L-PEPTIDE LINKING	C5 H11 N O2 Se		MET

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 2.40 Å
• R-Value Free:  0.232 (Depositor), 0.240 (DCC) 
• R-Value Work:  0.216 (Depositor), 0.210 (DCC) 
• R-Value Observed: 0.217 (Depositor) 

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 37.603	α = 90
b = 88.265	β = 90
c = 106.493	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
HKL-2000	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction
HKL-2000	data reduction

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-02-22 
Deposition Author(s): Wernimont, A.K., Amaya, M.F., Lam, A., Ali, A., Zhang, A.Z., Kenzina, L., Lin, Y.H., MacKenzie, F., Kozieradzki, I., Cossar, D., Schapira, M., Bochkarev, A., Arrowsmith, C.H., Bountra, C., Edwards, A.M., Weigelt, J., Hui, R., Walker, J.R., Qiu, W., Brand, V., Structural Genomics Consortium (SGC)
• This entry supersedes: 3FKM

Revision History  

• Version 1.0: 2017-02-22
  Type: Initial release
  
• Version 1.1: 2018-01-24
  Changes: Advisory, Database references, Structure summary
• Version 1.2: 2023-10-04
  Changes: Data collection, Database references, Refinement description
• Version 1.3: 2023-11-15
  Changes: Data collection
• Version 1.4: 2024-11-06
  Changes: Structure summary