5XK2

Crystal structure of mono- and diacylglycerol lipase from Aspergillus oryzae

PDB DOI: https://doi.org/10.2210/pdb5XK2/pdb

Classification: HYDROLASE
Organism(s): Aspergillus oryzae
Expression System: Escherichia coli-Pichia pastoris shuttle vector pPpARG4
Mutation(s): No
Membrane Protein: Yes OPM

Deposited: 2017-05-05 Released: 2018-05-09
Deposition Author(s): Wang, Y.H., Lan, D.M.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free:
0.168 (Depositor), 0.170 (DCC)
R-Value Work:
0.141 (Depositor), 0.140 (DCC)
R-Value Observed:
0.142 (Depositor)

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal structure of mono- and diacylglycerol lipase from Aspergillus oryzae

Wang, Y.H., Lan, D.M.

To be published.

Macromolecule Content

Total Structure Weight: 62.77 kDa
Atom Count: 4,726
Modelled Residue Count: 540
Deposited Residue Count: 572
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Diacylglycerol lipase	A, B	286	Aspergillus oryzae	Mutation(s): 0 Gene Names: mdlB, OAory_01019780 EC: 3.1.1.73 Membrane Entity: Yes
UniProt
Find proteins for P78583 (Aspergillus oryzae) Explore P78583 Go to UniProtKB: P78583
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P78583
Sequence Annotations Expand
Reference Sequence LOADING

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.70 Å
R-Value Free: 0.168 (Depositor), 0.170 (DCC)
R-Value Work: 0.141 (Depositor), 0.140 (DCC)
R-Value Observed: 0.142 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 47.329	α = 90
b = 67.277	β = 95.21
c = 89.574	γ = 90

Software Package:

Software Name	Purpose
XSCALE	data scaling
PHENIX	refinement
PDB_EXTRACT	data extraction
XDS	data reduction
PHASER	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2018-05-09

Deposition Author(s):

Revision History (Full details and data files)

Version 1.0: 2018-05-09
Type: Initial release
Version 1.1: 2024-10-30
Changes: Data collection, Database references, Structure summary

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.