Crystal structure of apo GGTaseIII
Goto-Ito, S., Shirakawa, R., Fukai, S.To be published.
Experimental Data Snapshot
Starting Models: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Protein prenyltransferase alpha subunit repeat-containing protein 1 | 366 | Homo sapiens | Mutation(s): 0  Gene Names: PTAR1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q7Z6K3 (Homo sapiens) Explore Q7Z6K3  Go to UniProtKB:  Q7Z6K3 | |||||
PHAROS:  Q7Z6K3 GTEx:  ENSG00000188647  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q7Z6K3 | ||||
Sequence AnnotationsExpand | |||||
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Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Geranylgeranyl transferase type-2 subunit beta | 336 | Homo sapiens | Mutation(s): 0  Gene Names: RABGGTB, GGTB EC: 2.5.1.60 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P53611 (Homo sapiens) Explore P53611  Go to UniProtKB:  P53611 | |||||
PHAROS:  P53611 GTEx:  ENSG00000137955  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P53611 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
MPD Query on MPD | C [auth A], E [auth B] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N | |||
MG Query on MG | D [auth B] | MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
CAS Query on CAS | A | L-PEPTIDE LINKING | C5 H12 As N O2 S | CYS |
Length ( Å ) | Angle ( ˚ ) |
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a = 88.54 | α = 90 |
b = 88.54 | β = 90 |
c = 647.581 | γ = 120 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
MOLREP | phasing |
Funding Organization | Location | Grant Number |
---|---|---|
Japan Science and Technology | Japan | CREST JPMJCR12M5 |
Japan Society for the Promotion of Science | Japan | KAKENHI 16K08574 |
Japan Society for the Promotion of Science | Japan | KAKENHI 16H05148 |