6JFM | pdb_00006jfm

Mitofusin2 (MFN2)_T111D


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free: 
    0.229 (Depositor), 0.230 (DCC) 
  • R-Value Work: 
    0.176 (Depositor), 0.176 (DCC) 
  • R-Value Observed: 
    0.178 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

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This is version 1.2 of the entry. See complete history

Literature

Structural insights of human mitofusin-2 into mitochondrial fusion and CMT2A onset.

Li, Y.J.Cao, Y.L.Feng, J.X.Qi, Y.Meng, S.Yang, J.F.Zhong, Y.T.Kang, S.Chen, X.Lan, L.Luo, L.Yu, B.Chen, S.Chan, D.C.Hu, J.Gao, S.

(2019) Nat Commun 10: 4914-4914

  • DOI: https://doi.org/10.1038/s41467-019-12912-0
  • Primary Citation Related Structures: 
    6JFK, 6JFL, 6JFM

  • PubMed Abstract: 

    Mitofusin-2 (MFN2) is a dynamin-like GTPase that plays a central role in regulating mitochondrial fusion and cell metabolism. Mutations in MFN2 cause the neurodegenerative disease Charcot-Marie-Tooth type 2A (CMT2A). The molecular basis underlying the physiological and pathological relevance of MFN2 is unclear. Here, we present crystal structures of truncated human MFN2 in different nucleotide-loading states. Unlike other dynamin superfamily members including MFN1, MFN2 forms sustained dimers even after GTP hydrolysis via the GTPase domain (G) interface, which accounts for its high membrane-tethering efficiency. The biochemical discrepancy between human MFN2 and MFN1 largely derives from a primate-only single amino acid variance. MFN2 and MFN1 can form heterodimers via the G interface in a nucleotide-dependent manner. CMT2A-related mutations, mapping to different functional zones of MFN2, lead to changes in GTP hydrolysis and homo/hetero-association ability. Our study provides fundamental insight into how mitofusins mediate mitochondrial fusion and the ways their disruptions cause disease.


  • Organizational Affiliation
    • State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University Cancer Center, 510060, Guangzhou, China.

Macromolecule Content 

  • Total Structure Weight: 99.93 kDa 
  • Atom Count: 7,099 
  • Modeled Residue Count: 841 
  • Deposited Residue Count: 876 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Mitofusin-2,Mitofusin-2
A, B
438Homo sapiensMacaca mulatta
This entity is chimeric
Mutation(s): 1 
Gene Names: MFN2CPRP1KIAA0214EGK_00242
EC: 3.6.5
UniProt & NIH Common Fund Data Resources
Find proteins for O95140 (Homo sapiens)
Explore O95140 
Go to UniProtKB:  O95140
PHAROS:  O95140
GTEx:  ENSG00000116688 
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupO95140
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.09 Å
  • R-Value Free:  0.229 (Depositor), 0.230 (DCC) 
  • R-Value Work:  0.176 (Depositor), 0.176 (DCC) 
  • R-Value Observed: 0.178 (Depositor) 
Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 44.437α = 90
b = 126.563β = 102.46
c = 79.972γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
MOLREPphasing

Structure Validation

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Entry History 

& Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina--

Revision History  (Full details and data files)

  • Version 1.0: 2019-11-13
    Type: Initial release
  • Version 1.1: 2023-11-22
    Changes: Data collection, Database references, Derived calculations, Refinement description
  • Version 1.2: 2024-10-30
    Changes: Structure summary