Crystal structure of VMB-1 bound to hydrolyzed meropenem
Chen, S., Cheng, Q.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
VMB-1 metallo-beta-lactamase | 234 | Vibrio alginolyticus | Mutation(s): 0  EC: 3.5.2.6 | ||
UniProt | |||||
Find proteins for A0A5Q5ADH9 (Vibrio alginolyticus) Explore A0A5Q5ADH9  Go to UniProtKB:  A0A5Q5ADH9 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | A0A5Q5ADH9 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
LMP (Subject of Investigation/LOI) Query on LMP | G [auth A], J [auth B], M [auth C], P [auth D] | (2~{S},3~{R},4~{S})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-(dimethylcarbamoy
l)pyrrolidin-3-yl]sulfanyl-3-methyl-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid C17 H27 N3 O6 S CDYPSIIDXKMBLV-CFINEGTKSA-N | |||
ZN (Subject of Investigation/LOI) Query on ZN | E [auth A] F [auth A] H [auth B] I [auth B] K [auth C] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
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a = 73.108 | α = 90 |
b = 96.777 | β = 90 |
c = 131.716 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
PDB_EXTRACT | data extraction |
XDS | data reduction |
autoPROC | data scaling |
PHASER | phasing |