6RLP

Cryo-EM reconstruction of TMV coat protein

• PDB DOI: https://doi.org/10.2210/pdb6RLP/pdb
• NAKB: 6RLP
• EM Map EMD-4928: EMDB EMDataResource

• Classification: VIRAL PROTEIN
• Organism(s): Tobacco mosaic virus
• Mutation(s): No 


• Deposited: 2019-05-02 Released: 2022-11-23 
• Deposition Author(s): Kandiah, E., Effantin, G.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 2.30 Å
• Aggregation State: HELICAL ARRAY 
• Reconstruction Method: HELICAL 

Literature

CM01: a facility for cryo-electron microscopy at the European Synchrotron.

Kandiah, E., Giraud, T., de Maria Antolinos, A., Dobias, F., Effantin, G., Flot, D., Hons, M., Schoehn, G., Susini, J., Svensson, O., Leonard, G.A., Mueller-Dieckmann, C.

(2019) Acta Crystallogr D Struct Biol 75: 528-535

• PubMed: 31205015 
• DOI: https://doi.org/10.1107/S2059798319006880
• Primary Citation of Related Structures:  
  6RLP


• PubMed Abstract: 
  

  Recent improvements in direct electron detectors, microscope technology and software provided the stimulus for a `quantum leap' in the application of cryo-electron microscopy in structural biology, and many national and international centres have since been created in order to exploit this. Here, a new facility for cryo-electron microscopy focused on single-particle reconstruction of biological macromolecules that has been commissioned at the European Synchrotron Radiation Facility (ESRF) is presented. The facility is operated by a consortium of institutes co-located on the European Photon and Neutron Campus and is managed in a similar fashion to a synchrotron X-ray beamline. It has been open to the ESRF structural biology user community since November 2017 and will remain open during the 2019 ESRF-EBS shutdown.

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Organizational Affiliation: 

European Synchrotron Radiation Facility, 71 Avenue des Martyrs, 38042 Grenoble, France.

Biological Assembly 1  

Global Symmetry: Helical - H  (Explore in 3D)
Global Stoichiometry: Homo 24-mer - A24 

Biological assembly 1 assigned by authors.

Macromolecule Content

• Total Structure Weight: 433.22 kDa 
• Atom Count: 30,552 
• Modelled Residue Count: 3,744 
• Deposited Residue Count: 3,744 
• Unique protein chains: 1
• Unique nucleic acid chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Capsid protein	A, AA [auth N], C [auth B], CA [auth O], E [auth C], EA [auth P], G [auth D], GA [auth Q], I [auth E], IA [auth S], K [auth F], KA [auth T], M [auth G], MA [auth U], O [auth H], OA [auth V], Q [auth I], QA [auth W], S [auth J], SA [auth X], U [auth K], UA [auth Y], W [auth L], Y [auth M]	153	Tobacco mosaic virus	Mutation(s): 0
UniProt
Find proteins for P69687 (Tobacco mosaic virus (strain vulgare)) Explore P69687  Go to UniProtKB:  P69687

Entity ID: 2
Molecule	Chains	Length	Organism	Image
RNA (5'-R(P*GP*AP*A)-3')	B [auth R], BA [auth l], D [auth Z], DA [auth m], F [auth a], FA [auth n], H [auth b], HA [auth o], J [auth c], JA [auth p], L [auth d], LA [auth q], N [auth e], NA [auth r], P [auth f], PA [auth s], R [auth g], RA [auth t], T [auth h], TA [auth u], V [auth i], VA [auth v], X [auth j], Z [auth k]	3	Tobacco mosaic virus

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 2.30 Å
• Aggregation State: HELICAL ARRAY 
• Reconstruction Method: HELICAL 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-11-23 
Deposition Author(s): Kandiah, E., Effantin, G.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2022-11-23
  Type: Initial release
  
• Version 1.1: 2024-06-12
  Changes: Data collection, Database references