6TAH

Crystal structure of a Nu-class Glutathione-S-Transferase from Pseudomonas aeruginosa PACS2 bound to glutathione


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.30 Å
  • R-Value Free: 
    0.140 (Depositor), 0.140 (DCC) 
  • R-Value Work: 
    0.120 (Depositor), 0.120 (DCC) 
  • R-Value Observed: 
    0.121 (Depositor) 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 

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This is version 1.1 of the entry. See complete history


Literature

Structure of nu-class glutathione transferase from Pseudomonas aeruginosa related to YfcG from E. coli

Ludewig, H.Blankenfeldt, W.Feiler, C.G.

To be published.

Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Glutathione S-transferaseA [auth AAA]214Pseudomonas aeruginosaMutation(s): 0 
Gene Names: yfcG_4NCTC13628_04787
Entity Groups  
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Sequence Annotations
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  • Reference Sequence
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
Glutathione S-transferase213Pseudomonas aeruginosaMutation(s): 0 
Gene Names: yfcG_4NCTC13628_04787
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Glutathione S-transferaseC [auth CAA]204Pseudomonas aeruginosaMutation(s): 0 
Gene Names: yfcG_4NCTC13628_04787
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
Glutathione S-transferaseD [auth DAA]203Pseudomonas aeruginosaMutation(s): 0 
Gene Names: yfcG_4NCTC13628_04787
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  • Reference Sequence
Small Molecules
Ligands 3 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
GDS (Subject of Investigation/LOI)
Query on GDS

Download Ideal Coordinates CCD File 
E [auth AAA],
H [auth B],
K [auth CAA],
N [auth DAA]
OXIDIZED GLUTATHIONE DISULFIDE
C20 H32 N6 O12 S2
YPZRWBKMTBYPTK-BJDJZHNGSA-N
GOL
Query on GOL

Download Ideal Coordinates CCD File 
G [auth AAA]GLYCEROL
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
EDO
Query on EDO

Download Ideal Coordinates CCD File 
F [auth AAA],
I [auth B],
J [auth B],
L [auth CAA],
M [auth CAA]
1,2-ETHANEDIOL
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Modified Residues  1 Unique
IDChains TypeFormula2D DiagramParent
MSE
Query on MSE
A [auth AAA]L-PEPTIDE LINKINGC5 H11 N O2 SeMET
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.30 Å
  • R-Value Free:  0.140 (Depositor), 0.140 (DCC) 
  • R-Value Work:  0.120 (Depositor), 0.120 (DCC) 
  • R-Value Observed: 0.121 (Depositor) 
Space Group: P 21 21 21
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 84.5α = 90
b = 96.61β = 90
c = 100.81γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement
PHENIXrefinement
XDSdata reduction
Aimlessdata scaling
SHELXDEphasing

Structure Validation

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Ligand Structure Quality Assessment 

Created with Raphaël 2.3.0Worse 01 BetterLigand structure goodness of fit to experimental dataBest fitted GDSClick on this verticalbar to view details

Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2020-09-16
    Type: Initial release
  • Version 1.1: 2024-11-13
    Changes: Data collection, Database references, Structure summary