Structure of SAMM50 LIR bound to GABARAPL1
Mouilleron, S., Wenxin, Z., Johansen, T., Tooze, S., Abudu, Y.P., Lamark, T.To be published.
Experimental Data Snapshot
wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Gamma-aminobutyric acid receptor-associated protein-like 1 | 123 | Homo sapiens | Mutation(s): 0  Gene Names: GABARAPL1, GEC1 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9H0R8 (Homo sapiens) Explore Q9H0R8  Go to UniProtKB:  Q9H0R8 | |||||
PHAROS:  Q9H0R8 GTEx:  ENSG00000139112  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9H0R8 | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by: Sequence | 3D Structure
Entity ID: 2 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Sorting and assembly machinery component 50 homolog | 12 | Homo sapiens | Mutation(s): 0  Gene Names: SAMM50, SAM50, CGI-51, TRG3 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for Q9Y512 (Homo sapiens) Explore Q9Y512  Go to UniProtKB:  Q9Y512 | |||||
PHAROS:  Q9Y512 GTEx:  ENSG00000100347  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9Y512 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 3 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
ZN Query on ZN | E [auth A], F [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N | |||
EDO Query on EDO | C [auth A], D [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N | |||
CL Query on CL | G [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |
Length ( Å ) | Angle ( ˚ ) |
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a = 43.98 | α = 90 |
b = 54.04 | β = 90 |
c = 62.07 | γ = 90 |
Software Name | Purpose |
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PHENIX | refinement |
PHENIX | refinement |
xia2 | data reduction |
Aimless | data scaling |
PHASER | phasing |