7BOM | pdb_00007bom

Crystal structure of recombinant horse spleen apo-R52C/E56C/R59C/E63C-Fr immobilized with gold ions.

PDB DOI: https://doi.org/10.2210/pdb7BOM/pdb

Classification: METAL BINDING PROTEIN
Organism(s): Equus caballus
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2020-03-19 Released: 2021-01-27
Deposition Author(s): Hishikawa, Y., Maity, B., Ito, N., Abe, S., Lu, D., Ueno, T.
Funding Organization(s): Japan Society for the Promotion of Science (JSPS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.93 Å
R-Value Free:
0.196 (Depositor), 0.198 (DCC)
R-Value Work:
0.163 (Depositor), 0.164 (DCC)
R-Value Observed:
0.165 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Design of Multinuclear Gold Binding Site at the Two-fold Symmetric Interface of the Ferritin Cage

Hishikawa, Y., Maity, B., Ito, N., Abe, S., Lu, D., Ueno, T.

(2021) Chem Lett 49: 840-844

DOI: https://doi.org/10.1246/cl.200217

Macromolecule Content

Total Structure Weight: 22.85 kDa
Atom Count: 1,536
Modeled Residue Count: 171
Deposited Residue Count: 174
Unique protein chains: 1

Macromolecules

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| 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Ferritin light chain	A [auth X]	174	Equus caballus	Mutation(s): 4 Gene Names: FTL
UniProt
Find proteins for P02791 (Equus caballus) Explore P02791 Go to UniProtKB: P02791
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	P02791
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 6 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
AU (Subject of Investigation/LOI) Query on AU Download:Ideal Coordinates CCD File SDF format, chain B [auth X] SDF format, chain C [auth X] SDF format, chain D [auth X] SDF format, chain F [auth X] SDF format, chain G [auth X] SDF format, chain H [auth X] SDF format, chain K [auth X] SDF format, chain M [auth X] SDF format, chain L [auth X] SDF format, chain J [auth X] SDF format, chain I [auth X] SDF format, chain E [auth X] MOL2 format, chain B [auth X] MOL2 format, chain C [auth X] MOL2 format, chain D [auth X] MOL2 format, chain F [auth X] MOL2 format, chain G [auth X] MOL2 format, chain H [auth X] MOL2 format, chain K [auth X] MOL2 format, chain M [auth X] MOL2 format, chain L [auth X] MOL2 format, chain J [auth X] MOL2 format, chain I [auth X] MOL2 format, chain E [auth X] mmCIF format, chain B [auth X] mmCIF format, chain C [auth X] mmCIF format, chain D [auth X] mmCIF format, chain F [auth X] mmCIF format, chain G [auth X] mmCIF format, chain H [auth X] mmCIF format, chain K [auth X] mmCIF format, chain M [auth X] mmCIF format, chain L [auth X] mmCIF format, chain J [auth X] mmCIF format, chain I [auth X] mmCIF format, chain E [auth X]	B [auth X] C [auth X] D [auth X] E [auth X] F [auth X] B [auth X], C [auth X], D [auth X], E [auth X], F [auth X], G [auth X], H [auth X], I [auth X], J [auth X], K [auth X], L [auth X], M [auth X]	GOLD ION Au ZBKIUFWVEIBQRT-UHFFFAOYSA-N		Interactions Focus chain B [auth X] Focus chain C [auth X] Focus chain D [auth X] Focus chain E [auth X] Focus chain F [auth X] Focus chain G [auth X] Focus chain H [auth X] Focus chain I [auth X] Focus chain J [auth X] Focus chain K [auth X] Focus chain L [auth X] Focus chain M [auth X] Interactions & Density Focus chain B [auth X] Focus chain C [auth X] Focus chain D [auth X] Focus chain E [auth X] Focus chain F [auth X] Focus chain G [auth X] Focus chain H [auth X] Focus chain I [auth X] Focus chain J [auth X] Focus chain K [auth X] Focus chain L [auth X] Focus chain M [auth X]
CD Query on CD Download:Ideal Coordinates CCD File SDF format, chain O [auth X] SDF format, chain P [auth X] SDF format, chain Q [auth X] SDF format, chain R [auth X] SDF format, chain N [auth X] MOL2 format, chain O [auth X] MOL2 format, chain P [auth X] MOL2 format, chain Q [auth X] MOL2 format, chain R [auth X] MOL2 format, chain N [auth X] mmCIF format, chain O [auth X] mmCIF format, chain P [auth X] mmCIF format, chain Q [auth X] mmCIF format, chain R [auth X] mmCIF format, chain N [auth X]	N [auth X], O [auth X], P [auth X], Q [auth X], R [auth X]	CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N		Interactions Focus chain N [auth X] Focus chain O [auth X] Focus chain P [auth X] Focus chain Q [auth X] Focus chain R [auth X] Interactions & Density Focus chain N [auth X] Focus chain O [auth X] Focus chain P [auth X] Focus chain Q [auth X] Focus chain R [auth X]
SO4 Query on SO4 Download:Ideal Coordinates CCD File SDF format, chain S [auth X] MOL2 format, chain S [auth X] mmCIF format, chain S [auth X]	S [auth X]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain S [auth X] Interactions & Density Focus chain S [auth X]
EDO Query on EDO Download:Ideal Coordinates CCD File SDF format, chain T [auth X] MOL2 format, chain T [auth X] mmCIF format, chain T [auth X]	T [auth X]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain T [auth X] Interactions & Density Focus chain T [auth X]
CL Query on CL Download:Ideal Coordinates CCD File SDF format, chain U [auth X] MOL2 format, chain U [auth X] mmCIF format, chain U [auth X]	U [auth X]	CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M		Interactions Focus chain U [auth X] Interactions & Density Focus chain U [auth X]
NA Query on NA Download:Ideal Coordinates CCD File SDF format, chain V [auth X] MOL2 format, chain V [auth X] mmCIF format, chain V [auth X]	V [auth X]	SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N		Interactions Focus chain V [auth X] Interactions & Density Focus chain V [auth X]