7BUI

Complex of reduced oxygenase and oxidized ferredoxin in carbazole 1,9a- dioxygenase

PDB DOI: https://doi.org/10.2210/pdb7BUI/pdb

Classification: OXIDOREDUCTASE
Organism(s): Janthinobacterium sp. J3, Metapseudomonas resinovorans
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2020-04-06 Released: 2021-04-07
Deposition Author(s): Matsuzawa, J., Wang, Y.X., Suzuki-Minakuchi, C., Nojiri, H.
Funding Organization(s): Noda Institute for Scientific Research

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.15 Å
R-Value Free: 0.238
R-Value Work: 0.187
R-Value Observed: 0.190

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Complex of reduced oxygenase and oxidized ferredoxin in carbazole 1,9a- dioxygenase

Matsuzawa, J., Wang, Y.X., Suzuki-Minakuchi, C., Nojiri, H.

To be published.

Macromolecule Content

Total Structure Weight: 161.51 kDa
Atom Count: 11,513
Modelled Residue Count: 1,372
Deposited Residue Count: 1,406
Unique protein chains: 2

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Terminal oxygenase component of carbazole	A, B, C	392	Janthinobacterium sp. J3	Mutation(s): 0 Gene Names: carAa
UniProt
Find proteins for Q84II6 (Janthinobacterium sp. (strain J3)) Explore Q84II6 Go to UniProtKB: Q84II6
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q84II6
Sequence Annotations Expand
Reference Sequence

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
Ferredoxin CarAc	D, E	115	Metapseudomonas resinovorans	Mutation(s): 0 Gene Names: carAc
UniProt
Find proteins for Q8GI16 (Pseudomonas resinovorans) Explore Q8GI16 Go to UniProtKB: Q8GI16
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q8GI16
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 4 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
FES Query on FES Download Ideal Coordinates CCD File SDF format, chain F [auth A] SDF format, chain K [auth B] SDF format, chain R [auth C] SDF format, chain W [auth D] SDF format, chain X [auth E] MOL2 format, chain F [auth A] MOL2 format, chain K [auth B] MOL2 format, chain R [auth C] MOL2 format, chain W [auth D] MOL2 format, chain X [auth E] mmCIF format, chain F [auth A] mmCIF format, chain K [auth B] mmCIF format, chain R [auth C] mmCIF format, chain W [auth D] mmCIF format, chain X [auth E]	F [auth A], K [auth B], R [auth C], W [auth D], X [auth E]	FE2/S2 (INORGANIC) CLUSTER Fe₂ S₂ NIXDOXVAJZFRNF-UHFFFAOYSA-N		Interactions Focus chain F [auth A] Focus chain K [auth B] Focus chain R [auth C] Focus chain W [auth D] Focus chain X [auth E] Interactions & Density Focus chain F [auth A] Focus chain K [auth B] Focus chain R [auth C] Focus chain W [auth D] Focus chain X [auth E]
PEG Query on PEG Download Ideal Coordinates CCD File SDF format, chain M [auth B] SDF format, chain Y [auth E] MOL2 format, chain M [auth B] MOL2 format, chain Y [auth E] mmCIF format, chain M [auth B] mmCIF format, chain Y [auth E]	M [auth B], Y [auth E]	DI(HYDROXYETHYL)ETHER C₄ H₁₀ O₃ MTHSVFCYNBDYFN-UHFFFAOYSA-N		Interactions Focus chain M [auth B] Focus chain Y [auth E] Interactions & Density Focus chain M [auth B] Focus chain Y [auth E]
EDO Query on EDO Download Ideal Coordinates CCD File SDF format, chain H [auth A] SDF format, chain I [auth A] SDF format, chain J [auth A] SDF format, chain N [auth B] SDF format, chain O [auth B] SDF format, chain P [auth B] SDF format, chain Q [auth B] SDF format, chain T [auth C] SDF format, chain U [auth C] SDF format, chain V [auth C] MOL2 format, chain H [auth A] MOL2 format, chain I [auth A] MOL2 format, chain J [auth A] MOL2 format, chain N [auth B] MOL2 format, chain O [auth B] MOL2 format, chain P [auth B] MOL2 format, chain Q [auth B] MOL2 format, chain T [auth C] MOL2 format, chain U [auth C] MOL2 format, chain V [auth C] mmCIF format, chain H [auth A] mmCIF format, chain I [auth A] mmCIF format, chain J [auth A] mmCIF format, chain N [auth B] mmCIF format, chain O [auth B] mmCIF format, chain P [auth B] mmCIF format, chain Q [auth B] mmCIF format, chain T [auth C] mmCIF format, chain U [auth C] mmCIF format, chain V [auth C]	H [auth A] I [auth A] J [auth A] N [auth B] O [auth B] H [auth A], I [auth A], J [auth A], N [auth B], O [auth B], P [auth B], Q [auth B], T [auth C], U [auth C], V [auth C]	1,2-ETHANEDIOL C₂ H₆ O₂ LYCAIKOWRPUZTN-UHFFFAOYSA-N		Interactions Focus chain H [auth A] Focus chain I [auth A] Focus chain J [auth A] Focus chain N [auth B] Focus chain O [auth B] Focus chain P [auth B] Focus chain Q [auth B] Focus chain T [auth C] Focus chain U [auth C] Focus chain V [auth C] Interactions & Density Focus chain H [auth A] Focus chain I [auth A] Focus chain J [auth A] Focus chain N [auth B] Focus chain O [auth B] Focus chain P [auth B] Focus chain Q [auth B] Focus chain T [auth C] Focus chain U [auth C] Focus chain V [auth C]
FE2 (Subject of Investigation/LOI) Query on FE2 Download Ideal Coordinates CCD File SDF format, chain G [auth A] SDF format, chain L [auth B] SDF format, chain S [auth C] MOL2 format, chain G [auth A] MOL2 format, chain L [auth B] MOL2 format, chain S [auth C] mmCIF format, chain G [auth A] mmCIF format, chain L [auth B] mmCIF format, chain S [auth C]	G [auth A], L [auth B], S [auth C]	FE (II) ION Fe CWYNVVGOOAEACU-UHFFFAOYSA-N		Interactions Focus chain G [auth A] Focus chain L [auth B] Focus chain S [auth C] Interactions & Density Focus chain G [auth A] Focus chain L [auth B] Focus chain S [auth C]