7EFT | pdb_00007eft

Crystal structure of cell shape-determining protein MreC


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free: 
    0.236 (Depositor), 0.238 (DCC) 
  • R-Value Work: 
    0.186 (Depositor), 0.188 (DCC) 
  • R-Value Observed: 
    0.190 (Depositor) 

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 7EFT

This is version 1.3 of the entry. See complete history

Literature

The crystal structure of MreC provides insights into polymer formation.

Xu, Q.Sun, N.Xiao, Q.Huang, C.Y.Xu, M.Zhang, W.Li, L.Wang, Q.Olieric, V.Wang, W.He, J.Sun, B.

(2022) FEBS Open Bio 12: 340-348

  • DOI: https://doi.org/10.1002/2211-5463.13296
  • Primary Citation Related Structures: 
    7EFT

  • PubMed Abstract: 

    MreC is a scaffold protein required for cell shape determination through interactions with proteins related to cell wall synthesis. Here, we determined the crystal structure of the major periplasmic part of MreC from Escherichia coli at 2.1 Å resolution. The periplasmic part of MreC contains a coiled-coil domain and two six-stranded barrel domains. The coiled-coil domain is essential for dimer formation, and the two monomers are prone to relative motion that is related to the small interface of β-barrel domains. In addition, MreC forms an antiparallel filament-like structure along the coiled-coil direction, which is different from the helical array structure in Pseudomonas aeruginosa. Our structure deepens our understanding of polymer formation of MreC.


  • Organizational Affiliation
    • Shanghai Institute of Applied Physics, Chinese Academy of Sciences, Shanghai, China.

Macromolecule Content 

  • Total Structure Weight: 79.21 kDa 
  • Atom Count: 3,471 
  • Modeled Residue Count: 426 
  • Deposited Residue Count: 734 
  • Unique protein chains: 1

Macromolecules

Find similar proteins by:|  3D Structure
Entity ID: 1
MoleculeChains  Sequence LengthOrganismDetailsImage
Cell shape protein MreC
A, B
367Escherichia coliMutation(s): 0 
Gene Names: 
mreCA6592_13940A9P13_02655ACU57_14180AM446_04030AM464_08875APT94_23460AUQ13_03360AWP75_14375B9T59_15940BANRA_01876BANRA_03739BIU72_05690BK334_09300BK375_18480BMA87_20860BMT91_11345BON83_09510BON86_01865BON87_17925BUE81_20005BvCms12BK_00952BvCms2454_03524BvCmsHHP001_01416BvCmsHHP056_02431BvCmsKKP061_00941BvCmsKSP011_01997BvCmsKSP024_00230BvCmsKSP026_03280BvCmsKSP045_01703BvCmsKSP067_01517BvCmsNSP047_04065BW690_19670BZL69_07990C2M16_03940C2U48_17255C4M78_03600C5715_13505C5F72_02875C5F73_03135C5N07_22630C6B13_17735C7B08_03855CA593_10025CDL37_12575CG692_13470CI694_29015CQP61_03360CRX46_03455CSB64_08235CWM24_22570D0X26_23695D2185_00140D3821_22845D3822_12505D4718_19165D9D20_06560D9D31_14415D9D43_03880D9D44_04695D9G11_02610D9G48_16935D9G69_01385D9H10_06920D9I88_07505D9I97_14960D9J03_05445D9J52_24030DB359_11060DBQ99_03705DD762_12835DJ503_15190DL257_05935DL326_23220DM102_15455DNX30_11675DT034_24485DTZ20_12380DXT71_00150DXT73_12865E2119_16600E2127_02840E2128_02230E2129_06025E2134_15330E2148_12755E4K51_20900E4K53_21150E4K55_20750E4K61_18265E5S58_03200E5S61_19155E5S62_13475EA214_08335EA218_14745EA433_04430EAI52_13645EC3234A_53c01270ECONIH1_19115ED307_14255EEP23_08945EI021_04350EI028_19725EI041_01715EIA08_12240EIZ93_10245EL75_0437EL79_0459EL80_0450ELV15_02095ELV28_06610ELX61_03590ELX76_03650ELY32_07020ELY41_17630ELY48_01450EPT01_00130EQ820_11810EQ823_05315ERS085366_00498EST51_02480EVY14_10875ExPECSC038_02760EXX71_13685EYD11_02335EYV18_18000EYY27_17085EYY34_10350F1E19_17665F9B07_01530F9X20_01600FAF34_018620FNJ69_15130FNW97_17800FORC82_0511FRV13_20275FV293_08090FV295_17395FWK02_08955FY127_07640FZC17_06505FZN26_16035G5603_16305G5608_17750G5616_12960G5632_04670G5688_06165GII66_07800GIJ01_13225GJ11_21070GKF34_18720GKF39_15510GKF52_18305GKF74_13415GKF86_14680GKF89_20670GP689_13590GQE22_11075GQE33_05275GQE34_11380GQE42_05685GQE64_09460GQE68_05940GQE87_18245GQE88_20005GQM17_12600GQY14_15475GRW05_15480GRW42_17760GRW57_15680GRW80_11780GRW81_05030GUB08_00115HHJ41_10835HmCms184_00156HmCmsJML074_01111HV065_15440HV109_02440HVW04_17830HVX17_02685HVY77_02435HVY93_02305HVZ21_02645HX136_02450MS6198_37340NCTC10082_02893NCTC10090_03583NCTC10764_03922NCTC10963_00510NCTC10974_00609NCTC11022_03417NCTC11112_00973NCTC11126_02835NCTC12950_00534NCTC13216_01298NCTC8450_05001NCTC8500_00403NCTC8621_00570NCTC9007_04471NCTC9045_00620NCTC9050_03665NCTC9058_01322NCTC9062_02634NCTC9073_00319NCTC9117_00813NCTC9962_00309PGD_03866RK56_014280SAMEA3472044_04279SAMEA3472080_04127SAMEA3472110_01466SAMEA3472112_01450SAMEA3484427_00526SAMEA3484429_00816SAMEA3484434_04417SAMEA3752372_01856SAMEA3752559_03191SAMEA3753097_04160SAMEA3753300_02049SK85_03563WP2S18E08_04520WP5S18E08_04820WP7S17E04_04550WP7S18E09_04710WR15_24175YDC107_1916

UniProt
Find proteins for P16926 (Escherichia coli (strain K12))
Explore P16926 
Go to UniProtKB:  P16926
Entity Groups
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP16926
Sequence Annotations
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Reference Sequence

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.10 Å
  • R-Value Free:  0.236 (Depositor), 0.238 (DCC) 
  • R-Value Work:  0.186 (Depositor), 0.188 (DCC) 
  • R-Value Observed: 0.190 (Depositor) 
Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 133.291α = 90
b = 47.583β = 99.18
c = 77.332γ = 90
Software Package:
Software NamePurpose
SCALEPACKdata scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-3000data reduction
PHASERphasing

Structure Validation

View Full Validation Report



Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2021-10-20
    Type: Initial release
  • Version 1.1: 2022-02-16
    Changes: Database references
  • Version 1.2: 2023-11-29
    Changes: Data collection, Refinement description
  • Version 1.3: 2024-10-23
    Changes: Structure summary