7OZX
Structure of human galactokinase 1 bound with azepan-1-yl(2,6-difluorophenyl)methanone
- PDB DOI: https://doi.org/10.2210/pdb7OZX/pdb
- Classification: TRANSFERASE
- Organism(s): Homo sapiens
- Expression System: Escherichia coli BL21(DE3)
- Mutation(s): Yes 
- Deposited: 2021-06-29 Released: 2022-05-25 
- Funding Organization(s): Wellcome Trust
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.258 
- R-Value Work: 0.208 
- R-Value Observed: 0.211 
This is version 1.1 of the entry. See complete history. 
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
---|---|---|---|---|---|
Molecule | Chains | Sequence Length | Organism | Details | Image |
Galactokinase | 399 | Homo sapiens | Mutation(s): 2  Gene Names: GALK1, GALK EC: 2.7.1.6 | ||
UniProt & NIH Common Fund Data Resources | |||||
Find proteins for P51570 (Homo sapiens) Explore P51570  Go to UniProtKB:  P51570 | |||||
PHAROS:  P51570 GTEx:  ENSG00000108479  | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | P51570 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
Ligands 3 Unique | |||||
---|---|---|---|---|---|
ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
HFK Query on HFK | F [auth A], H [auth B], K [auth C] | 2-(1,3-benzoxazol-2-ylamino)spiro[1,6,7,8-tetrahydroquinazoline-4,1'-cyclohexane]-5-one C20 H22 N4 O2 AZBGHUMVHJKFOO-UHFFFAOYSA-N | |||
WLJ (Subject of Investigation/LOI) Query on WLJ | I [auth B], L [auth C] | (azepan-1-yl)(2,6-difluorophenyl)methanone C13 H15 F2 N O RRINWFXOXXUQGK-UHFFFAOYSA-N | |||
GAL Query on GAL | E [auth A], G [auth B], J [auth C] | beta-D-galactopyranose C6 H12 O6 WQZGKKKJIJFFOK-FPRJBGLDSA-N |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.30 Å
- R-Value Free: 0.258 
- R-Value Work: 0.208 
- R-Value Observed: 0.211 
- Space Group: P 1 21 1
Unit Cell:
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 73.456 | α = 90 |
b = 114.499 | β = 100.57 |
c = 120.822 | γ = 90 |
Software Name | Purpose |
---|---|
REFMAC | refinement |
Aimless | data scaling |
PDB_EXTRACT | data extraction |
xia2 | data reduction |
PHASER | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2022-05-25  Deposition Author(s): Mackinnon, S.R., Bezerra, G.A., Zhang, M., Foster, W., Krojer, T., Brandao-Neto, J., Arrowsmith, C., Edwards, A., Bountra, C., Brennan, P., Lai, K., Yue, W.W.
Funding Organization | Location | Grant Number |
---|---|---|
Wellcome Trust | United Kingdom | 092809/Z/10/Z |
Revision History (Full details and data files)
- Version 1.0: 2022-05-25
Type: Initial release - Version 1.1: 2024-01-31
Changes: Data collection, Refinement description