7UVE

Drosophila melanogaster setdb1-tuor domain with peptide H3K9me2K14ac

PDB DOI: https://doi.org/10.2210/pdb7UVE/pdb

Classification: TRANSFERASE
Organism(s): Drosophila melanogaster, Drosophila sechellia
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-05-01 Released: 2022-08-10
Deposition Author(s): Zhou, M., Dong, A., Liu, K., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)
Funding Organization(s): Other private

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free:
0.289 (Depositor), 0.300 (DCC)
R-Value Work:
0.246 (Depositor), 0.240 (DCC)
R-Value Observed:
0.249 (Depositor)

Starting Model: experimental
View more details

wwPDB Validation 3D Report Full Report

This is version 1.2 of the entry. See complete history.

Literature

Drosophila melanogaster setdb1-tuor domain with peptide H3K9me2K14ac

Zhou, M., Dong, A., Liu, K., Arrowsmith, C.H., Edwards, A.M., Min, J., Structural Genomics Consortium (SGC)

To be published.

Macromolecule Content

Total Structure Weight: 31.45 kDa
Atom Count: 1,886
Modelled Residue Count: 236
Deposited Residue Count: 274
Unique protein chains: 2

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Histone-lysine N-methyltransferase eggless	A	257	Drosophila melanogaster	Mutation(s): 0 Gene Names: egg, CG12196 EC: 2.1.1.355
UniProt
Find proteins for Q32KD2 (Drosophila melanogaster) Explore Q32KD2 Go to UniProtKB: Q32KD2
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	Q32KD2
Sequence Annotations Expand
Reference Sequence LOADING

Find similar proteins by: Sequence | 3D Structure

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
peptide H3K9me2K14ac	B	17	Drosophila sechellia	Mutation(s): 0
UniProt
Find proteins for B4I1C5 (Drosophila sechellia) Explore B4I1C5 Go to UniProtKB: B4I1C5
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	B4I1C5
Sequence Annotations Expand
Reference Sequence LOADING

Small Molecules

Modified Residues 2 Unique
ID	Chains	Type	Formula	2D Diagram	Parent
ALY Query on ALY	B	L-PEPTIDE LINKING	C₈ H₁₆ N₂ O₃		LYS
MLZ Query on MLZ	B	L-PEPTIDE LINKING	C₇ H₁₆ N₂ O₂		LYS

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.30 Å
R-Value Free: 0.289 (Depositor), 0.300 (DCC)
R-Value Work: 0.246 (Depositor), 0.240 (DCC)
R-Value Observed: 0.249 (Depositor)

Space Group: I 2 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 61.269	α = 90
b = 111.134	β = 90
c = 112.149	γ = 90

Software Package:

Software Name	Purpose
BUSTER	refinement
HKL-2000	data scaling
PHASER	phasing
PDB_EXTRACT	data extraction
HKL-3000	data reduction

Structure Validation

View Full Validation Report

Entry History & Funding Information

Deposition Data

Released Date: 2022-08-10

Deposition Author(s):

Arrowsmith, C.H.

Structural Genomics Consortium (SGC)

Funding Organization	Location	Grant Number
Other private		--

Revision History (Full details and data files)

Version 1.0: 2022-08-10
Type: Initial release
Version 1.1: 2023-10-18
Changes: Data collection, Refinement description
Version 1.2: 2023-11-15
Changes: Data collection

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.