7VE7 | pdb_00007ve7

Crystal structure of KRED mutant-F147L/L153Q/Y190P/L199A/M205F/M206F

• PDB DOI: https://doi.org/10.2210/pdb7VE7/pdb

• Classification: OXIDOREDUCTASE
• Organism(s): Lentilactobacillus kefiri
• Expression System: Escherichia coli 'BL21-Gold(DE3)pLysS AG
• Mutation(s): Yes 


• Deposited: 2021-09-08 Released: 2022-05-11 
• Deposition Author(s): Cui, J., Huang, X., Wang, B., Zhao, H., Zhou, J.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.72 Å
• R-Value Free: 
  0.210 (Depositor), 0.181 (DCC) 
• R-Value Work: 
  0.174 (Depositor), 0.177 (DCC) 
• R-Value Observed: 
  0.175 (Depositor) 

Starting Model: experimental

Literature

Photoinduced chemomimetic biocatalysis for enantioselective intermolecular radical conjugate addition

Huang, X., Feng, J., Cui, J., Jiang, G., Harrison, W., Zang, X., Zhou, J., Wang, B., Zhao, H.

(2022) Nat Catal 

• DOI: https://doi.org/10.1038/s41929-022-00777-4

Biological Assembly 1  

Global Symmetry: Dihedral - D2  (Explore in 3D)
Global Stoichiometry: Homo 4-mer - A4 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: homology

Macromolecule Content 

• Total Structure Weight: 110.11 kDa 
• Atom Count: 7,989 
• Modeled Residue Count: 1,005 
• Deposited Residue Count: 1,012 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
3-alpha-(Or 20-beta)-hydroxysteroid dehydrogenase	A, B, C, D	253	Lentilactobacillus kefiri	Mutation(s): 6  Gene Names: adhR, fabG3, DNL43_05835, LKE01_04370 EC: 1.1.1
UniProt
Find proteins for Q6WVP7 (Lentilactobacillus kefiri) Explore Q6WVP7  Go to UniProtKB:  Q6WVP7

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAP (Subject of Investigation/LOI)	F [auth A], G [auth B], H [auth C], J [auth D]	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H28 N7 O17 P3 XJLXINKUBYWONI-NNYOXOHSSA-N
MG	E [auth A], I [auth D]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.72 Å
• R-Value Free:  0.210 (Depositor), 0.181 (DCC) 
• R-Value Work:  0.174 (Depositor), 0.177 (DCC) 
• R-Value Observed: 0.175 (Depositor) 

Space Group: C 1 2 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 128.31	α = 90
b = 55.57	β = 103.89
c = 128.56	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
xia2	data reduction
xia2	data scaling
PHENIX	phasing

Structure Validation

Entry History 

& Funding Information

Deposition Data

• Released Date: 2022-05-11 
Deposition Author(s): Cui, J., Huang, X., Wang, B., Zhao, H., Zhou, J.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2022-05-11
  Type: Initial release
  
• Version 1.1: 2023-11-29
  Changes: Data collection, Refinement description