Download MendeleyThe mutant crystal structure of b-1,4-Xylanase (XynAF1_R246K) with xylobiose
Li, G.Q., Zhang, R.F.To be published.
7WHE
The mutant crystal structure of b-1,4-Xylanase (XynAF1_R246K) with xylobiose
- PDB DOI: 10.2210/pdb7WHE/pdb
- Classification: HYDROLASE
- Organism(s): Aspergillus fumigatus
- Expression System: Komagataella pastoris
- Mutation(s): Yes
- Deposited: 2021-12-30 Released: 2023-01-25
- Funding Organization(s): National Natural Science Foundation of China (NSFC)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.184
- R-Value Work: 0.151
- R-Value Observed: 0.153
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Beta-xylanase | A, B | 329 | Aspergillus fumigatus | Mutation(s): 1 Gene Names: CDV57_00377, CNMCM8057_000533, CNMCM8686_001998 EC: 3.2.1.8 |  |
UniProt | |||||
Find proteins for A0A229WLM4 (Neosartorya fumigata) Explore A0A229WLM4 Go to UniProtKB: A0A229WLM4 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A229WLM4 | ||||
Protein Feature ViewExpand | |||||
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Oligosaccharides
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Chain Length | 2D Diagram | Glycosylation | 3D Interactions |
| beta-D-xylopyranose-(1-4)-alpha-D-xylopyranose | C | 2 |  | N/A | Oligosaccharides Interaction |
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NAG Query on NAG | D [auth A] | 2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N |  | Ligand Interaction | |
| GOL Query on GOL | E [auth A], F [auth A], G [auth A], H [auth A], I [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.75 Å
- R-Value Free: 0.184
- R-Value Work: 0.151
- R-Value Observed: 0.153
- Space Group: P 2 21 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 68.056 | α = 90 |
| b = 85.854 | β = 90 |
| c = 97.701 | γ = 90 |
| Software Name | Purpose |
|---|---|
| HKL-2000 | data scaling |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-3000 | data reduction |
| REFMAC | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-01-25 Deposition Author(s): Li, G.Q., Zhang, R.F.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Natural Science Foundation of China (NSFC) | China | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-01-25
Type: Initial release
