7WHZ

SARS-CoV-2 spike protein in complex with three human neutralizing antibodies

• PDB DOI: https://doi.org/10.2210/pdb7WHZ/pdb
• EM Map EMD-32516: EMDB EMDataResource

• Classification: VIRAL PROTEIN
• Organism(s): Severe acute respiratory syndrome coronavirus 2, Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): No 


• Deposited: 2022-01-01 Released: 2022-06-22 
• Deposition Author(s): Zheng, Q., Li, S., Sun, H., Zheng, Z., Wang, S.
• Funding Organization(s): Not funded

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.42 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 7-mer - A2B1C1D1E1F1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 7-mer - A6B1 Local Symmetry: Cyclic - C2  (Explore in 3D)
Local Stoichiometry: Homo 2-mer - A2 

Local Symmetry: Cyclic - C2  (Explore in 3D)
Local Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: electron microscopy

Macromolecule Content

• Total Structure Weight: 96.86 kDa 
• Atom Count: 6,810 
• Modelled Residue Count: 887 
• Deposited Residue Count: 888 
• Unique protein chains: 7

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Spike protein S1	A	195	Severe acute respiratory syndrome coronavirus 2	Mutation(s): 0  Gene Names: S, 2
UniProt
Find proteins for P0DTC2 (Severe acute respiratory syndrome coronavirus 2) Explore P0DTC2  Go to UniProtKB:  P0DTC2

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
XMA04 heavy chain variable domain	B	124	Homo sapiens	Mutation(s): 0

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
XMA01 heavy chain variable domain	C	122	Homo sapiens	Mutation(s): 0

Entity ID: 4
Molecule	Chains	Sequence Length	Organism	Details	Image
IGL c4029_light_IGKV1-39_IGKJ2	D	107	Homo sapiens	Mutation(s): 0
UniProt
Find proteins for A0A5C2G4I7 (Homo sapiens) Explore A0A5C2G4I7  Go to UniProtKB:  A0A5C2G4I7

Entity ID: 5
Molecule	Chains	Sequence Length	Organism	Details	Image
IG c934_light_IGKV1-5_IGKJ1	E	107	Homo sapiens	Mutation(s): 0
UniProt
Find proteins for A0A5C2GTV1 (Homo sapiens) Explore A0A5C2GTV1  Go to UniProtKB:  A0A5C2GTV1

Entity ID: 6
Molecule	Chains	Sequence Length	Organism	Details	Image
XMA09 heavy chain variable domain	F [auth H]	123	Homo sapiens	Mutation(s): 0

Entity ID: 7
Molecule	Chains	Sequence Length	Organism	Details	Image
IG c1437_light_IGLV1-40_IGLJ1	G [auth L]	110	Homo sapiens	Mutation(s): 0
UniProt
Find proteins for A0A5C2GVU3 (Homo sapiens) Explore A0A5C2GVU3  Go to UniProtKB:  A0A5C2GVU3

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
NAG (Subject of Investigation/LOI)	H [auth A]	2-acetamido-2-deoxy-beta-D-glucopyranose C8 H15 N O6 OVRNDRQMDRJTHS-FMDGEEDCSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.42 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2022-06-22 
Deposition Author(s): Zheng, Q., Li, S., Sun, H., Zheng, Z., Wang, S.

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Funding Organization	Location	Grant Number
Not funded		--

Revision History  

• Version 1.0: 2022-06-22
  Type: Initial release