7X40

Cryo-EM structure of Coxsackievirus B1 mature virion in complex with nAb 8A10 (classified from CVB1 mature virion in complex with 8A10 and 2E6)


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.02 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


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Literature

Structural basis for the synergistic neutralization of coxsackievirus B1 by a triple-antibody cocktail.

Zheng, Q.Zhu, R.Yin, Z.Xu, L.Sun, H.Yu, H.Wu, Y.Jiang, Y.Huang, Q.Huang, Y.Zhang, D.Liu, L.Yang, H.He, M.Zhou, Z.Jiang, Y.Chen, Z.Zhao, H.Que, Y.Kong, Z.Zhou, L.Li, T.Zhang, J.Luo, W.Gu, Y.Cheng, T.Li, S.Xia, N.

(2022) Cell Host Microbe 30: 1279-1294.e6

  • DOI: https://doi.org/10.1016/j.chom.2022.08.001
  • Primary Citation of Related Structures:  
    7X2G, 7X2I, 7X2O, 7X2T, 7X2W, 7X37, 7X38, 7X3C, 7X3D, 7X3E, 7X3F, 7X40, 7X42, 7X46, 7X47, 7X49, 7X4K, 7X4M

  • PubMed Abstract: 

    Coxsackievirus B1 (CVB1) is an emerging pathogen associated with severe neonatal diseases including aseptic meningitis, myocarditis, and pancreatitis and also with the development of type 1 diabetes. We characterize the binding and therapeutic efficacies of three CVB1-specific neutralizing antibodies (nAbs) identified for their ability to inhibit host receptor engagement. High-resolution cryo-EM structures showed that these antibodies recognize different epitopes but with an overlapping region in the capsid VP2 protein and specifically the highly variable EF loop. Moreover, they perturb capsid-receptor interactions by binding various viral particle forms. Antibody combinations achieve synergetic neutralization via a stepwise capsid transition and virion disruption, indicating dynamic changes in the virion in response to multiple nAbs targeting the receptor-binding site. Furthermore, this three-antibody cocktail protects against lethal challenge in neonatal mice and limits pancreatitis and viral replication in a non-obese diabetic mouse model. These results illustrate the utility of nAbs for rational design of therapeutics against picornaviruses such as CVB.


  • Organizational Affiliation

    State Key Laboratory of Molecular Vaccinology and Molecular Diagnostics, National Institute of Diagnostics and Vaccine Development in Infectious Diseases, School of Life Sciences & School of Public Health, Xiamen University, Xiamen, Fujian 361102, People's Republic of China.


Macromolecules
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Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
8A10 light chainA [auth L]108Mus musculusMutation(s): 0 
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Entity ID: 2
MoleculeChains Sequence LengthOrganismDetailsImage
8A10 heavy chainB [auth H]118Mus musculusMutation(s): 0 
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Entity ID: 3
MoleculeChains Sequence LengthOrganismDetailsImage
Virion protein 1C [auth A]278Coxsackievirus B1Mutation(s): 0 
UniProt
Find proteins for A0A7T7KAA0 (Coxsackievirus B1)
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UniProt GroupA0A7T7KAA0
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Entity ID: 4
MoleculeChains Sequence LengthOrganismDetailsImage
VP2D [auth B]263Coxsackievirus B1Mutation(s): 0 
UniProt
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UniProt GroupA0A7T7KAA0
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Entity ID: 5
MoleculeChains Sequence LengthOrganismDetailsImage
VP3E [auth C]238Coxsackievirus B1Mutation(s): 0 
EC: 3.4.22.29 (PDB Primary Data), 3.6.1.15 (PDB Primary Data), 3.4.22.28 (PDB Primary Data), 2.7.7.48 (PDB Primary Data)
UniProt
Find proteins for A0A7T7KAA0 (Coxsackievirus B1)
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UniProt GroupA0A7T7KAA0
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Entity ID: 6
MoleculeChains Sequence LengthOrganismDetailsImage
Capsid protein VP4F [auth D]69Coxsackievirus B1Mutation(s): 0 
UniProt
Find proteins for A0A7T7KAA0 (Coxsackievirus B1)
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UniProt GroupA0A7T7KAA0
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Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
PLM (Subject of Investigation/LOI)
Query on PLM

Download Ideal Coordinates CCD File 
G [auth A]PALMITIC ACID
C16 H32 O2
IPCSVZSSVZVIGE-UHFFFAOYSA-N
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.02 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

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Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Not funded--

Revision History  (Full details and data files)

  • Version 1.0: 2022-09-28
    Type: Initial release