7YII | pdb_00007yii

Carboxylesterase - RoCE

PDB DOI: https://doi.org/10.2210/pdb7YII/pdb

Classification: HYDROLASE
Organism(s): Rhodococcus opacus
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2022-07-16 Released: 2023-07-19
Deposition Author(s): Dou, Z., Jia, P., Ni, Y., Xu, G.C.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.78 Å
R-Value Free:
0.189 (Depositor), 0.197 (DCC)
R-Value Work:
0.157 (Depositor), 0.170 (DCC)
R-Value Observed:
0.158 (Depositor)

Starting Model: experimental
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wwPDB Validation 3D Report Full Report

Validation slider image for 7YII

This is version 1.1 of the entry. See complete history.

Literature

Carboxylesterase - RoCE

Dou, Z., Jia, P., Ni, Y., Xu, G.C.

To be published.

Macromolecule Content

Total Structure Weight: 56.81 kDa
Atom Count: 4,422
Modeled Residue Count: 546
Deposited Residue Count: 550
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Non-heme haloperoxidase	A, B	275	Rhodococcus opacus	Mutation(s): 0 Gene Names: R1CP_28090 EC: 1.11.1
UniProt
Find proteins for A0A1B1KCC1 (Rhodococcus opacus) Explore A0A1B1KCC1 Go to UniProtKB: A0A1B1KCC1
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A1B1KCC1
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.78 Å
R-Value Free: 0.189 (Depositor), 0.197 (DCC)
R-Value Work: 0.157 (Depositor), 0.170 (DCC)
R-Value Observed: 0.158 (Depositor)

Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 48.677	α = 90
b = 90.472	β = 90
c = 131.358	γ = 90

Software Package:

Software Name	Purpose
REFMAC	refinement
PDB_EXTRACT	data extraction
HKL-3000	data reduction
HKL-3000	data scaling
HKL-3000	phasing

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-07-19

Deposition Author(s):

Funding Organization	Location	Grant Number
National Natural Science Foundation of China (NSFC)	China	22078127

Revision History (Full details and data files)

Version 1.0: 2023-07-19
Type: Initial release
Version 1.1: 2023-11-29
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.