7ZEL

Human SLFN11 dimer apoenzyme


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

wwPDB Validation   3D Report Full Report


This is version 1.0 of the entry. See complete history


Literature

Mechanistic understanding of human SLFN11.

Metzner, F.J.Wenzl, S.J.Kugler, M.Krebs, S.Hopfner, K.P.Lammens, K.

(2022) Nat Commun 13: 5464-5464

  • DOI: https://doi.org/10.1038/s41467-022-33123-0
  • Primary Citation of Related Structures:  
    7ZEL, 7ZEP, 7ZES

  • PubMed Abstract: 

    Schlafen 11 (SLFN11) is an interferon-inducible antiviral restriction factor with tRNA endoribonuclease and DNA binding functions. It is recruited to stalled replication forks in response to replication stress and inhibits replication of certain viruses such as the human immunodeficiency virus 1 (HIV-1) by modulating the tRNA pool. SLFN11 has been identified as a predictive biomarker in cancer, as its expression correlates with a beneficial response to DNA damage inducing anticancer drugs. However, the mechanism and interdependence of these two functions are largely unknown. Here, we present cryo-electron microscopy (cryo-EM) structures of human SLFN11 in its dimeric apoenzyme state, bound to tRNA and in complex with single-strand DNA. Full-length SLFN11 neither hydrolyses nor binds ATP and the helicase domain appears in an autoinhibited state. Together with biochemical and structure guided mutagenesis studies, our data give detailed insights into the mechanism of endoribonuclease activity as well as suggestions on how SLFN11 may block stressed replication forks.


  • Organizational Affiliation

    Gene Center and Department of Biochemistry, Ludwig-Maximilians-Universität München, Feodor-Lynen Straße 25, 81377, Munich, Germany.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Schlafen family member 11
A, B
929Homo sapiensMutation(s): 0 
Gene Names: SLFN11
EC: 3.6
UniProt & NIH Common Fund Data Resources
Find proteins for Q7Z7L1 (Homo sapiens)
Explore Q7Z7L1 
Go to UniProtKB:  Q7Z7L1
PHAROS:  Q7Z7L1
GTEx:  ENSG00000172716 
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ7Z7L1
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 2.80 Å
  • Aggregation State: PARTICLE 
  • Reconstruction Method: SINGLE PARTICLE 

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
German Research Foundation (DFG)Germany1054
European Research Council (ERC)European UnionINO3D

Revision History  (Full details and data files)

  • Version 1.0: 2022-09-28
    Type: Initial release