7TXT

Structure of human serotonin transporter bound to small molecule '8090 in lipid nanodisc and NaCl

• PDB DOI:  https://doi.org/10.2210/pdb7TXT/pdb
• EM Map EMD-26160: EMDB EMDataResource

• Classification: TRANSPORT PROTEIN
• Organism(s): Mus musculus, Homo sapiens
• Expression System: Homo sapiens
• Mutation(s): No 
• Membrane Protein: Yes  OPMPDBTMMemProtMD


• Deposited: 2022-02-09 Released: 2023-03-15 
• Deposition Author(s): Singh, I., Seth, A., Billesboelle, C.B., Braz, J., Rodriguiz, R.M., Roy, K., Bekele, B., Craik, V., Huang, X.P., Boytsov, D., Lak, P., O'Donnell, H., Sandtner, W., Roth, B.L., Basbaum, A.I., Wetsel, W.C., Manglik, A., Shoichet, B.K., Rudnick, G.
• Funding Organization(s): Department of Defense (DOD, United States)

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Experimental Data Snapshot

• Method: ELECTRON MICROSCOPY
• Resolution: 3.00 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

Literature

Structure of human serotonin transporter bound to small molecule '8090 in lipid nanodisc and NaCl

Singh, I., Seth, A., Billesboelle, C.B., Braz, J., Rodriguiz, R.M., Roy, K., Bekele, B., Craik, V., Huang, X.P., Boytsov, D., Lak, P., O'Donnell, H., Sandtner, W., Roth, B.L., Basbaum, A.I., Wetsel, W.C., Manglik, A., Shoichet, B.K., Rudnick, G.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Hetero 3-mer - A1B1C1 Pseudo Symmetry: Asymmetric - C1 
Pseudo Stoichiometry: Hetero 3-mer - A2B1 

Biological assembly 1 assigned by authors.

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 86.4 kDa 
• Atom Count: 6,093 
• Modelled Residue Count: 772 
• Deposited Residue Count: 772 
• Unique protein chains: 3

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
15B8 Fab heavy chain	A [auth C]	120	Mus musculus	Mutation(s): 0

Entity ID: 2
Molecule	Chains	Sequence Length	Organism	Details	Image
15B8 Fab light chain	B [auth D]	111	Mus musculus	Mutation(s): 0

Entity ID: 3
Molecule	Chains	Sequence Length	Organism	Details	Image
Sodium-dependent serotonin transporter	C [auth S]	541	Homo sapiens	Mutation(s): 0  Gene Names: SLC6A4, HTT, SERT Membrane Entity: Yes
UniProt & NIH Common Fund Data Resources
Find proteins for P31645 (Homo sapiens) Explore P31645  Go to UniProtKB:  P31645
PHAROS:  P31645

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
KWC (Subject of Investigation/LOI)	D [auth S]	1-[4-(4-fluorophenyl)-1,3-thiazol-2-yl]piperazine C13 H14 F N3 S DZOSNUNUESTDRS-UHFFFAOYSA-N

Experimental Data & Validation

Experimental Data

• Method: ELECTRON MICROSCOPY
• Resolution: 3.00 Å
• Aggregation State: PARTICLE 
• Reconstruction Method: SINGLE PARTICLE 

EM Software:

Task	Software Package	Version
RECONSTRUCTION	cryoSPARC	3.2.0

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2023-03-15 
Deposition Author(s): Singh, I., Seth, A., Billesboelle, C.B., Braz, J., Rodriguiz, R.M., Roy, K., Bekele, B., Craik, V., Huang, X.P., Boytsov, D., Lak, P., O'Donnell, H., Sandtner, W., Roth, B.L., Basbaum, A.I., Wetsel, W.C., Manglik, A., Shoichet, B.K., Rudnick, G.

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Funding Organization	Location	Grant Number
Department of Defense (DOD, United States)	United States	HR0011-19-2-0020

Revision History  

• Version 1.0: 2023-03-15
  Type: Initial release