8A8S | pdb_00008a8s

30S ribosomal protein S24e from Thermococcus kodakarensis

PDB DOI: https://doi.org/10.2210/pdb8A8S/pdb

Classification: GENE REGULATION
Organism(s): Thermococcus kodakarensis
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2022-06-23 Released: 2023-07-05
Deposition Author(s): Calio, A., Hoh, F.
Funding Organization(s): Agence Nationale de la Recherche (ANR), Centre National de la Recherche Scientifique (CNRS)

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.66 Å
R-Value Free:
0.260 (Depositor), 0.268 (DCC)
R-Value Work:
0.220 (Depositor), 0.229 (DCC)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

30S ribosomal protein S24e from Thermococcus kodakarensis

Calio, A., Hoh, F.

To be published.

Macromolecule Content

Total Structure Weight: 11.2 kDa
Atom Count: 867
Modeled Residue Count: 96
Deposited Residue Count: 96
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
30S ribosomal protein S24e	A	96	Thermococcus kodakarensis	Mutation(s): 0 Gene Names: rps24e, TK1696
UniProt
Find proteins for Q5JIY8 (Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)) Explore Q5JIY8 Go to UniProtKB: Q5JIY8
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	Q5JIY8
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.66 Å
R-Value Free: 0.260 (Depositor), 0.268 (DCC)
R-Value Work: 0.220 (Depositor), 0.229 (DCC)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 23.551	α = 90
b = 55.272	β = 98.98
c = 37.579	γ = 90

Software Package:

Software Name	Purpose
XDS	data reduction
Aimless	data scaling
PHASER	phasing
PHENIX	refinement
PDB_EXTRACT	data extraction

Structure Validation

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Entry History

& Funding Information

Deposition Data

Released Date: 2023-07-05

Deposition Author(s):

Funding Organization	Location	Grant Number
Agence Nationale de la Recherche (ANR)	France	17-CE11-0012-01
Centre National de la Recherche Scientifique (CNRS)	France	MITI OriginsUnderPressure et LifeAdapt

Revision History (Full details and data files)

Version 1.0: 2023-07-05
Type: Initial release
Version 1.1: 2024-02-07
Changes: Data collection, Refinement description

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.