8C9K | pdb_00008c9k

Structure of Mpox virus poxin

PDB DOI: https://doi.org/10.2210/pdb8C9K/pdb

Classification: VIRAL PROTEIN
Organism(s): Monkeypox virus
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2023-01-23 Released: 2023-05-31
Deposition Author(s): Duchoslav, V., Boura, E.
Funding Organization(s): Not funded

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 1.72 Å
R-Value Free:
0.228 (Depositor), 0.227 (DCC)
R-Value Work:
0.214 (Depositor), 0.213 (DCC)
R-Value Observed:
0.214 (Depositor)

Starting Model: experimental
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This is version 1.1 of the entry. See complete history.

Literature

Structure of Mpox virus poxin

Duchoslav, V., Boura, E.

To be published.

Macromolecule Content

Total Structure Weight: 90.04 kDa
Atom Count: 7,079
Modeled Residue Count: 776
Deposited Residue Count: 792
Unique protein chains: 1

Macromolecules

Find similar proteins by:

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MPXVgp165	A, B, C, D	198	Monkeypox virus	Mutation(s): 0 Gene Names: MPXV-M5312_HM12_Rivers-164
UniProt
Find proteins for A0A7H0DNF0 (Monkeypox virus) Explore A0A7H0DNF0 Go to UniProtKB: A0A7H0DNF0
Entity Groups
Sequence Clusters	30% Identity 50% Identity 70% Identity 90% Identity 95% Identity 100% Identity
UniProt Group	A0A7H0DNF0
Sequence Annotations Expand
Reference Sequence

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 1.72 Å
R-Value Free: 0.228 (Depositor), 0.227 (DCC)
R-Value Work: 0.214 (Depositor), 0.213 (DCC)
R-Value Observed: 0.214 (Depositor)

Space Group: P 1 2₁ 1

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 54.43	α = 90
b = 94.13	β = 105.26
c = 94.67	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PHENIX	refinement
XDS	data reduction
XDS	data scaling
PHENIX	phasing

Structure Validation

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View more in-depth experimental data

Entry History

& Funding Information

Deposition Data

Released Date: 2023-05-31

Deposition Author(s):

Funding Organization	Location	Grant Number
Not funded		--

Revision History (Full details and data files)

Version 1.0: 2023-05-31
Type: Initial release
Version 1.1: 2024-06-19
Changes: Data collection

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.