Download MendeleyStructure of GII.17 norovirus in complex with Nanobody 45
Kher, G., Sabin, C., Pancera, M., Koromyslova, A., Hansman, G.To be published.
8EN3
Structure of GII.17 norovirus in complex with Nanobody 45
- PDB DOI: 10.2210/pdb8EN3/pdb
- Classification: VIRAL PROTEIN
- Organism(s): Norovirus, Vicugna pacos
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2022-09-28 Released: 2023-03-15
- Funding Organization(s): German Research Foundation (DFG)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.263
- R-Value Work: 0.213
- R-Value Observed: 0.215
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Capsid protein VP1 | A, B | 308 | Norovirus | Mutation(s): 0 Gene Names: VP1, ORF2 |  |
UniProt | |||||
Find proteins for A0A0S1Z370 (Norovirus GII) Explore A0A0S1Z370 Go to UniProtKB: A0A0S1Z370 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | A0A0S1Z370 | ||||
Protein Feature ViewExpand | |||||
| |||||
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Nanobody 45 | C, D | 143 | Vicugna pacos | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Protein Feature ViewExpand | |||||
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Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | E [auth A], F [auth B] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.10 Å
- R-Value Free: 0.263
- R-Value Work: 0.213
- R-Value Observed: 0.215
- Space Group: P 1 21 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 79.495 | α = 90 |
| b = 71.306 | β = 113.32 |
| c = 82.615 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PHENIX | refinement |
| XDS | data reduction |
| XSCALE | data scaling |
| PHENIX | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-03-15 Deposition Author(s): Kher, G., Sabin, C., Pancera, M., Koromyslova, A., Hansman, G.
| Funding Organization | Location | Grant Number |
|---|---|---|
| German Research Foundation (DFG) | Germany | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-03-15
Type: Initial release
