Download MendeleyObtaining anomalous and ensemble information from protein crystals from 220 K up to physiological temperatures
Doukov, T., Herschlag, D., Yabukarski, F.(2023) Acta Crystallogr D Biol Crystallogr D79: 212-223
8EZO
Lysozyme Anomalous Dataset at 220 K and 7.1 keV
- PDB DOI: 10.2210/pdb8EZO/pdb
- Classification: HYDROLASE
- Organism(s): Gallus gallus
- Expression System: Gallus gallus
- Mutation(s): No
- Deposited: 2022-11-01 Released: 2023-03-15
- Funding Organization(s): National Science Foundation (NSF, United States), Human Frontier Science Program (HFSP)
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.191
- R-Value Work: 0.156
wwPDB Validation 3D Report Full Report
This is version 1.0 of the entry. See complete history.
Literature
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Lysozyme C | A | 129 | Gallus gallus | Mutation(s): 0 Gene Names: LYZ EC: 3.2.1.17 |  |
UniProt | |||||
Find proteins for P00698 (Gallus gallus) Explore P00698 Go to UniProtKB: P00698 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | P00698 | ||||
Protein Feature ViewExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| EDO Query on EDO | J [auth A] | 1,2-ETHANEDIOL C2 H6 O2 LYCAIKOWRPUZTN-UHFFFAOYSA-N |  | Ligand Interaction | |
| CL Query on CL | B [auth A], C [auth A], D [auth A], E [auth A], F [auth A], | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | Ligand Interaction | |
| NA Query on NA | I [auth A], M [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | Ligand Interaction | |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.90 Å
- R-Value Free: 0.191
- R-Value Work: 0.156
- Space Group: P 43 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 76.909 | α = 90 |
| b = 76.909 | β = 90 |
| c = 36.961 | γ = 90 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| XDS | data reduction |
| Aimless | data scaling |
| SHELXDE | phasing |
Entry History & Funding Information
Deposition Data
- Released Date: 2023-03-15 Deposition Author(s): Doukov, T., Yabukarski, F.
| Funding Organization | Location | Grant Number |
|---|---|---|
| National Science Foundation (NSF, United States) | United States | MCB-1714723 |
| Human Frontier Science Program (HFSP) | France | -- |
Revision History (Full details and data files)
- Version 1.0: 2023-03-15
Type: Initial release
